Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J3X entry

There are 4 chains in PDB entry 5J3X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 47	ASP 435
B	PRO 47	ASP 435
C	PRO 47	ASP 435
D	PRO 47	THR 152

There are112 helices in PDB entry 5J3X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	71	Right-handed alpha
Helix 2	AA2	A	83	102	Right-handed alpha
Helix 3	AA3	A	105	111	Right-handed alpha
Helix 4	AA4	A	112	137	Right-handed alpha
Helix 5	AA5	A	138	141	Right-handed 310
Helix 6	AA6	A	145	169	Right-handed alpha
Helix 7	AA7	A	170	173	Right-handed 310
Helix 8	AA8	A	183	195	Right-handed alpha
Helix 9	AA9	A	202	213	Right-handed alpha
Helix 10	AB1	A	217	229	Right-handed alpha
Helix 11	AB2	A	238	248	Right-handed alpha
Helix 12	AB3	A	253	262	Right-handed alpha
Helix 13	AB4	A	273	282	Right-handed alpha
Helix 14	AB5	A	283	285	Right-handed 310
Helix 15	AB6	A	323	334	Right-handed alpha
Helix 16	AB7	A	349	353	Right-handed 310
Helix 17	AB8	A	364	373	Right-handed alpha
Helix 18	AB9	A	401	411	Right-handed alpha
Helix 19	AC1	B	52	71	Right-handed alpha
Helix 20	AC2	B	83	102	Right-handed alpha
Helix 21	AC3	B	106	111	Right-handed alpha
Helix 22	AC4	B	112	137	Right-handed alpha
Helix 23	AC5	B	138	141	Right-handed 310
Helix 24	AC6	B	145	169	Right-handed alpha
Helix 25	AC7	B	170	173	Right-handed 310
Helix 26	AC8	B	183	195	Right-handed alpha
Helix 27	AC9	B	202	213	Right-handed alpha
Helix 28	AD1	B	217	229	Right-handed alpha
Helix 29	AD2	B	238	248	Right-handed alpha
Helix 30	AD3	B	250	252	Right-handed 310
Helix 31	AD4	B	253	262	Right-handed alpha
Helix 32	AD5	B	273	281	Right-handed alpha
Helix 33	AD6	B	323	334	Right-handed alpha
Helix 34	AD7	B	349	353	Right-handed 310
Helix 35	AD8	B	364	373	Right-handed alpha
Helix 36	AD9	B	401	411	Right-handed alpha
Helix 37	AE1	C	52	71	Right-handed alpha
Helix 38	AE2	C	83	102	Right-handed alpha
Helix 39	AE3	C	105	112	Right-handed alpha
Helix 40	AE4	C	112	137	Right-handed alpha
Helix 41	AE5	C	138	142	Right-handed 310
Helix 42	AE6	C	145	169	Right-handed alpha
Helix 43	AE7	C	170	173	Right-handed 310
Helix 44	AE8	C	183	194	Right-handed alpha
Helix 45	AE9	C	202	213	Right-handed alpha
Helix 46	AF1	C	217	229	Right-handed alpha
Helix 47	AF2	C	238	248	Right-handed alpha
Helix 48	AF3	C	250	252	Right-handed 310
Helix 49	AF4	C	253	262	Right-handed alpha
Helix 50	AF5	C	273	281	Right-handed alpha
Helix 51	AF6	C	282	285	Right-handed 310
Helix 52	AF7	C	323	334	Right-handed alpha
Helix 53	AF8	C	364	373	Right-handed alpha
Helix 54	AF9	C	401	411	Right-handed alpha
Helix 55	AG1	D	52	71	Right-handed alpha
Helix 56	AG2	D	72	76	Right-handed 310
Helix 57	AG3	D	83	102	Right-handed alpha
Helix 58	AG4	D	105	112	Right-handed alpha
Helix 59	AG5	D	112	137	Right-handed alpha
Helix 60	AG6	D	138	140	Right-handed 310
Helix 61	AG7	D	145	169	Right-handed alpha
Helix 62	AG8	D	170	173	Right-handed 310
Helix 63	AG9	D	175	179	Right-handed 310
Helix 64	AH1	D	183	195	Right-handed alpha
Helix 65	AH2	D	202	213	Right-handed alpha
Helix 66	AH3	D	217	229	Right-handed alpha
Helix 67	AH4	D	238	248	Right-handed alpha
Helix 68	AH5	D	250	252	Right-handed 310
Helix 69	AH6	D	253	262	Right-handed alpha
Helix 70	AH7	D	273	283	Right-handed alpha
Helix 71	AH8	D	323	334	Right-handed alpha
Helix 72	AH9	D	349	353	Right-handed 310
Helix 73	AI1	D	364	373	Right-handed alpha
Helix 74	AI2	D	401	410	Right-handed alpha
Helix 75	AI3	E	52	71	Right-handed alpha
Helix 76	AI4	E	83	102	Right-handed alpha
Helix 77	AI5	E	105	112	Right-handed alpha
Helix 78	AI6	E	112	137	Right-handed alpha
Helix 79	AI7	E	138	142	Right-handed 310
Helix 80	AI8	E	145	169	Right-handed alpha
Helix 81	AI9	E	170	173	Right-handed 310
Helix 82	AJ1	E	183	195	Right-handed alpha
Helix 83	AJ2	E	202	213	Right-handed alpha
Helix 84	AJ3	E	217	229	Right-handed alpha
Helix 85	AJ4	E	238	248	Right-handed alpha
Helix 86	AJ5	E	250	252	Right-handed 310
Helix 87	AJ6	E	253	262	Right-handed alpha
Helix 88	AJ7	E	273	281	Right-handed alpha
Helix 89	AJ8	E	282	285	Right-handed 310
Helix 90	AJ9	E	323	334	Right-handed alpha
Helix 91	AK1	E	349	354	Right-handed 310
Helix 92	AK2	E	364	373	Right-handed alpha
Helix 93	AK3	E	401	411	Right-handed alpha
Helix 94	AK4	F	52	71	Right-handed alpha
Helix 95	AK5	F	83	102	Right-handed alpha
Helix 96	AK6	F	106	112	Right-handed alpha
Helix 97	AK7	F	112	137	Right-handed alpha
Helix 98	AK8	F	137	142	Right-handed alpha
Helix 99	AK9	F	145	169	Right-handed alpha
Helix 100	AL1	F	170	173	Right-handed 310
Helix 101	AL2	F	183	195	Right-handed alpha
Helix 102	AL3	F	202	211	Right-handed alpha
Helix 103	AL4	F	217	229	Right-handed alpha
Helix 104	AL5	F	238	248	Right-handed alpha
Helix 105	AL6	F	250	252	Right-handed 310
Helix 106	AL7	F	253	262	Right-handed alpha
Helix 107	AL8	F	273	282	Right-handed alpha
Helix 108	AL9	F	283	285	Right-handed 310
Helix 109	AM1	F	323	334	Right-handed alpha
Helix 110	AM2	F	349	354	Right-handed 310
Helix 111	AM3	F	364	373	Right-handed alpha
Helix 112	AM4	F	401	410	Right-handed alpha

There are 24 sheets in PDB entry 5J3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	235	237	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	290	295	parallel
Strand 3	A	303	308	anti-parallel
Strand 4	A	314	317	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	290	295	parallel
Strand 3	A	339	340	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	391	394	anti-parallel
Strand 3	A	425	427	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	235	237	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	290	295	parallel
Strand 3	B	303	308	anti-parallel
Strand 4	B	314	317	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	290	295	parallel
Strand 3	B	339	340	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	391	394	anti-parallel
Strand 3	B	425	428	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	235	237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	271	first strand
Strand 2	C	290	295	parallel
Strand 3	C	303	308	anti-parallel
Strand 4	C	314	317	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	271	first strand
Strand 2	C	290	295	parallel
Strand 3	C	339	340	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	391	394	anti-parallel
Strand 3	C	425	427	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	235	237	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	271	first strand
Strand 2	D	290	295	parallel
Strand 3	D	303	308	anti-parallel
Strand 4	D	314	317	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	271	first strand
Strand 2	D	290	295	parallel
Strand 3	D	339	340	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	391	394	anti-parallel
Strand 3	D	425	427	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	201	first strand
Strand 2	E	235	237	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	271	first strand
Strand 2	E	290	295	parallel
Strand 3	E	303	308	anti-parallel
Strand 4	E	314	317	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	271	first strand
Strand 2	E	290	295	parallel
Strand 3	E	339	340	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	400	first strand
Strand 2	E	391	394	anti-parallel
Strand 3	E	425	427	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	235	237	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	271	first strand
Strand 2	F	290	295	parallel
Strand 3	F	303	308	anti-parallel
Strand 4	F	314	317	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	271	first strand
Strand 2	F	290	295	parallel
Strand 3	F	339	340	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	400	first strand
Strand 2	F	391	394	anti-parallel
Strand 3	F	425	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J3X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3X