Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J5A entry

There are 2 chains in PDB entry 5J5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 238THR 767
B
 GLY 232THR 767
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5J5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
256 276Right-handed alpha
Helix 2
AA2
A
290 300Right-handed alpha
Helix 3
AA3
A
303 322Right-handed alpha
Helix 4
AA4
A
334 351Right-handed alpha
Helix 5
AA5
A
372 374Right-handed 310
Helix 6
AA6
A
409 411Right-handed 310
Helix 7
AA7
A
412 423Right-handed alpha
Helix 8
AA8
A
429 443Right-handed alpha
Helix 9
AA9
A
472 479Right-handed alpha
Helix 10
AB1
A
479 485Right-handed alpha
Helix 11
AB2
A
501 505Right-handed 310
Helix 12
AB3
A
519 525Right-handed alpha
Helix 13
AB4
A
525 535Right-handed alpha
Helix 14
AB5
A
564 573Right-handed alpha
Helix 15
AB6
A
573 585Right-handed alpha
Helix 16
AB7
A
594 605Right-handed alpha
Helix 17
AB8
A
609 619Right-handed alpha
Helix 18
AB9
A
635 658Right-handed alpha
Helix 19
AC1
A
660 683Right-handed alpha
Helix 20
AC2
A
683 691Right-handed alpha
Helix 21
AC3
A
691 714Right-handed alpha
Helix 22
AC4
A
717 729Right-handed alpha
Helix 23
AC5
A
731 736Right-handed 310
Helix 24
AC6
A
737 742Right-handed 310
Helix 25
AC7
B
256 276Right-handed alpha
Helix 26
AC8
B
290 300Right-handed alpha
Helix 27
AC9
B
303 322Right-handed alpha
Helix 28
AD1
B
334 351Right-handed alpha
Helix 29
AD2
B
409 411Right-handed 310
Helix 30
AD3
B
412 423Right-handed alpha
Helix 31
AD4
B
429 443Right-handed alpha
Helix 32
AD5
B
472 478Right-handed alpha
Helix 33
AD6
B
479 486Right-handed alpha
Helix 34
AD7
B
501 505Right-handed 310
Helix 35
AD8
B
519 525Right-handed alpha
Helix 36
AD9
B
525 535Right-handed alpha
Helix 37
AE1
B
564 573Right-handed alpha
Helix 38
AE2
B
573 585Right-handed alpha
Helix 39
AE3
B
594 605Right-handed alpha
Helix 40
AE4
B
609 619Right-handed alpha
Helix 41
AE5
B
635 658Right-handed alpha
Helix 42
AE6
B
660 683Right-handed alpha
Helix 43
AE7
B
683 691Right-handed alpha
Helix 44
AE8
B
691 714Right-handed alpha
Helix 45
AE9
B
717 729Right-handed alpha
Helix 46
AF1
B
731 736Right-handed 310
Helix 47
AF2
B
737 742Right-handed 310
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There are 10 sheets in PDB entry 5J5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
280 287parallel
Strand 3
A
242 250parallel
Strand 4
A
512 516parallel
Strand 5
A
541 545parallel
Strand 6
A
427 428parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
354 364anti-parallel
Strand 3
A
397 407anti-parallel
Strand 4
A
447 448anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Strand 2
A
386 390anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 452first strand
Strand 2
A
466 471anti-parallel
Strand 3
A
462 463anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 489first strand
Strand 2
A
495 498anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
280 287parallel
Strand 3
B
242 250parallel
Strand 4
B
512 516parallel
Strand 5
B
541 545parallel
Strand 6
B
427 428parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 364first strand
Strand 2
B
397 407anti-parallel
Strand 3
B
447 448anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
450 452first strand
Strand 2
B
466 471anti-parallel
Strand 3
B
462 463anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 489first strand
Strand 2
B
495 498anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
549 550first strand
Strand 2
B
592 593parallel
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