Analysis of interatomic Contacts of Structural Units in PDB entry:
5J67


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J67 entry

There are 3 chains in PDB entry 5J67 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 717ARG 1288
B
LYS 717GLY 1287
C
LYS 717SER 851
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5J67. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
785 789Right-handed 310
Helix 2
AA2
A
823 836Right-handed alpha
Helix 3
AA3
A
838 850Right-handed alpha
Helix 4
AA4
A
871 887Right-handed alpha
Helix 5
AA5
A
899 911Right-handed alpha
Helix 6
AA6
A
963 966Right-handed 310
Helix 7
AA7
A
968 985Right-handed alpha
Helix 8
AA8
A
1143 1161Right-handed alpha
Helix 9
AA9
A
1163 1177Right-handed alpha
Helix 10
AB1
A
1178 1194Right-handed alpha
Helix 11
AB2
A
1195 1197Right-handed 310
Helix 12
AB3
A
1198 1208Right-handed alpha
Helix 13
AB4
A
1208 1221Right-handed alpha
Helix 14
AB5
A
1223 1230Right-handed alpha
Helix 15
AB6
A
1262 1266Right-handed 310
Helix 16
AB7
B
785 789Right-handed 310
Helix 17
AB8
B
823 836Right-handed alpha
Helix 18
AB9
B
838 850Right-handed alpha
Helix 19
AC1
B
871 887Right-handed alpha
Helix 20
AC2
B
899 911Right-handed alpha
Helix 21
AC3
B
963 966Right-handed 310
Helix 22
AC4
B
968 985Right-handed alpha
Helix 23
AC5
B
1143 1161Right-handed alpha
Helix 24
AC6
B
1163 1177Right-handed alpha
Helix 25
AC7
B
1178 1194Right-handed alpha
Helix 26
AC8
B
1195 1197Right-handed 310
Helix 27
AC9
B
1198 1208Right-handed alpha
Helix 28
AD1
B
1208 1221Right-handed alpha
Helix 29
AD2
B
1223 1230Right-handed alpha
Helix 30
AD3
B
1262 1266Right-handed 310
Helix 31
AD4
C
785 789Right-handed 310
Helix 32
AD5
C
823 836Right-handed alpha
Helix 33
AD6
C
838 850Right-handed alpha
Helix 34
AD7
C
871 887Right-handed alpha
Helix 35
AD8
C
899 911Right-handed alpha
Helix 36
AD9
C
963 966Right-handed 310
Helix 37
AE1
C
968 985Right-handed alpha
Helix 38
AE2
C
1143 1161Right-handed alpha
Helix 39
AE3
C
1163 1177Right-handed alpha
Helix 40
AE4
C
1178 1194Right-handed alpha
Helix 41
AE5
C
1195 1197Right-handed 310
Helix 42
AE6
C
1198 1208Right-handed alpha
Helix 43
AE7
C
1208 1221Right-handed alpha
Helix 44
AE8
C
1223 1230Right-handed alpha
Helix 45
AE9
C
1262 1266Right-handed 310
Helix 46
AF1
D
785 789Right-handed 310
Helix 47
AF2
D
823 836Right-handed alpha
Helix 48
AF3
D
838 850Right-handed alpha
Helix 49
AF4
D
871 887Right-handed alpha
Helix 50
AF5
D
899 911Right-handed alpha
Helix 51
AF6
D
963 966Right-handed 310
Helix 52
AF7
D
968 985Right-handed alpha
Helix 53
AF8
D
1143 1161Right-handed alpha
Helix 54
AF9
D
1163 1177Right-handed alpha
Helix 55
AG1
D
1178 1194Right-handed alpha
Helix 56
AG2
D
1195 1197Right-handed 310
Helix 57
AG3
D
1198 1208Right-handed alpha
Helix 58
AG4
D
1208 1221Right-handed alpha
Helix 59
AG5
D
1223 1230Right-handed alpha
Helix 60
AG6
D
1262 1266Right-handed 310
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There are 28 sheets in PDB entry 5J67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
763 767first strand
Strand 2
A
813 817anti-parallel
Strand 3
A
852 860anti-parallel
Strand 4
A
952 961anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
775 778first strand
Strand 2
A
802 809anti-parallel
Strand 3
A
782 783anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
775 778first strand
Strand 2
A
802 809anti-parallel
Strand 3
A
862 869anti-parallel
Strand 4
A
923 929anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
791 792first strand
Strand 2
A
1131 1136parallel
Strand 3
A
1113 1122anti-parallel
Strand 4
A
1047 1057anti-parallel
Strand 5
A
1069 1072anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
989 992first strand
Strand 2
A
995 998anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1020 1021first strand
Strand 2
A
1032 1037anti-parallel
Strand 3
A
1099 1105anti-parallel
Strand 4
A
1086 1092anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1234 1249first strand
Strand 2
A
1268 1283anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
763 767first strand
Strand 2
B
813 817anti-parallel
Strand 3
B
852 860anti-parallel
Strand 4
B
952 961anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
775 778first strand
Strand 2
B
802 809anti-parallel
Strand 3
B
782 783anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
775 778first strand
Strand 2
B
802 809anti-parallel
Strand 3
B
862 869anti-parallel
Strand 4
B
923 929anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
791 792first strand
Strand 2
B
1131 1136parallel
Strand 3
B
1113 1122anti-parallel
Strand 4
B
1047 1057anti-parallel
Strand 5
B
1069 1072anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
989 992first strand
Strand 2
B
995 998anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1020 1021first strand
Strand 2
B
1032 1037anti-parallel
Strand 3
B
1099 1105anti-parallel
Strand 4
B
1086 1092anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1235 1249first strand
Strand 2
B
1268 1282anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
763 767first strand
Strand 2
C
813 817anti-parallel
Strand 3
C
852 860anti-parallel
Strand 4
C
952 961anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
775 778first strand
Strand 2
C
802 809anti-parallel
Strand 3
C
782 783anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
775 778first strand
Strand 2
C
802 809anti-parallel
Strand 3
C
862 869anti-parallel
Strand 4
C
923 929anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
791 792first strand
Strand 2
C
1131 1136parallel
Strand 3
C
1113 1122anti-parallel
Strand 4
C
1047 1057anti-parallel
Strand 5
C
1069 1072anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
989 992first strand
Strand 2
C
995 998anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1020 1021first strand
Strand 2
C
1032 1037anti-parallel
Strand 3
C
1099 1105anti-parallel
Strand 4
C
1086 1092anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1235 1249first strand
Strand 2
C
1268 1282anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
763 767first strand
Strand 2
D
813 817anti-parallel
Strand 3
D
852 860anti-parallel
Strand 4
D
952 961anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
775 778first strand
Strand 2
D
802 809anti-parallel
Strand 3
D
782 783anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
775 778first strand
Strand 2
D
802 809anti-parallel
Strand 3
D
862 869anti-parallel
Strand 4
D
923 929anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
791 792first strand
Strand 2
D
1131 1136parallel
Strand 3
D
1113 1122anti-parallel
Strand 4
D
1047 1056anti-parallel
Strand 5
D
1069 1072anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
989 992first strand
Strand 2
D
995 998anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1020 1021first strand
Strand 2
D
1032 1037anti-parallel
Strand 3
D
1099 1105anti-parallel
Strand 4
D
1086 1092anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1234 1249first strand
Strand 2
D
1268 1283anti-parallel
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