Analysis of interatomic Contacts of Structural Units in PDB entry:
5J6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J6D entry

There are 2 chains in PDB entry 5J6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 102ILE 393
B
 MET 102LYS 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5J6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 118Right-handed 310
Helix 2
AA2
A
138 155Right-handed alpha
Helix 3
AA3
A
167 189Right-handed alpha
Helix 4
AA4
A
190 205Right-handed alpha
Helix 5
AA5
A
213 226Right-handed alpha
Helix 6
AA6
A
237 246Right-handed alpha
Helix 7
AA7
A
269 277Right-handed alpha
Helix 8
AA8
A
277 282Right-handed alpha
Helix 9
AA9
A
283 298Right-handed alpha
Helix 10
AB1
A
301 314Right-handed alpha
Helix 11
AB2
A
331 336Right-handed alpha
Helix 12
AB3
A
337 345Right-handed alpha
Helix 13
AB4
A
355 360Right-handed alpha
Helix 14
AB5
A
378 391Right-handed alpha
Helix 15
AB6
B
111 113Right-handed 310
Helix 16
AB7
B
114 119Right-handed alpha
Helix 17
AB8
B
139 155Right-handed alpha
Helix 18
AB9
B
173 189Right-handed alpha
Helix 19
AC1
B
190 197Right-handed alpha
Helix 20
AC2
B
215 225Right-handed alpha
Helix 21
AC3
B
237 247Right-handed alpha
Helix 22
AC4
B
269 277Right-handed alpha
Helix 23
AC5
B
277 282Right-handed alpha
Helix 24
AC6
B
283 298Right-handed alpha
Helix 25
AC7
B
301 315Right-handed alpha
Helix 26
AC8
B
331 336Right-handed alpha
Helix 27
AC9
B
337 346Right-handed alpha
Helix 28
AD1
B
355 360Right-handed alpha
Helix 29
AD2
B
380 391Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5J6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
249 252parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
372 376parallel
Strand 4
A
350 353parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 231first strand
Strand 2
B
249 252parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il