Analysis of interatomic Contacts of Structural Units in PDB entry:
5J7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J7T entry

There is 1 chain in PDB entry 5J7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 211LEU 881
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5J7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 234Right-handed alpha
Helix 2
AA2
A
235 244Right-handed alpha
Helix 3
AA3
A
255 270Right-handed alpha
Helix 4
AA4
A
276 282Right-handed alpha
Helix 5
AA5
A
295 312Right-handed alpha
Helix 6
AA6
A
318 325Right-handed alpha
Helix 7
AA7
A
359 368Right-handed alpha
Helix 8
AA8
A
489 494Right-handed alpha
Helix 9
AA9
A
495 498Right-handed 310
Helix 10
AB1
A
523 528Right-handed alpha
Helix 11
AB2
A
532 536Right-handed 310
Helix 12
AB3
A
537 562Right-handed alpha
Helix 13
AB4
A
571 575Right-handed 310
Helix 14
AB5
A
601 614Right-handed alpha
Helix 15
AB6
A
647 652Right-handed alpha
Helix 16
AB7
A
666 674Right-handed alpha
Helix 17
AB8
A
712 715Right-handed 310
Helix 18
AB9
A
716 725Right-handed alpha
Helix 19
AC1
A
752 757Right-handed alpha
Helix 20
AC2
A
772 777Right-handed 310
Helix 21
AC3
A
782 792Right-handed alpha
Helix 22
AC4
A
818 830Right-handed alpha
Helix 23
AC5
A
833 835Right-handed 310
Helix 24
AC6
A
860 865Right-handed alpha
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There are 7 sheets in PDB entry 5J7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 347first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
393 395anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
401 406parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 459anti-parallel
Strand 5
A
430 432anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
401 406parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 459anti-parallel
Strand 5
A
462 469anti-parallel
Strand 6
A
478 481anti-parallel
Strand 7
A
484 487anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 382first strand
Strand 2
A
385 387anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 597first strand
Strand 2
A
564 570anti-parallel
Strand 3
A
658 664parallel
Strand 4
A
620 627anti-parallel
Strand 5
A
633 635anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 708first strand
Strand 2
A
684 693anti-parallel
Strand 3
A
764 770parallel
Strand 4
A
732 739anti-parallel
Strand 5
A
742 745anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 814first strand
Strand 2
A
793 800anti-parallel
Strand 3
A
875 880parallel
Strand 4
A
837 840anti-parallel
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