Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J9H entry

There is 1 chain in PDB entry 5J9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 666TYR 1078
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5J9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
678 680Right-handed 310
Helix 2
2
A
755 758Right-handed 310
Helix 3
3
A
862 864Right-handed 310
Helix 4
4
A
922 932Right-handed alpha
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There are 9 sheets in PDB entry 5J9H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
683 690first strand
Strand 2
A
958 965anti-parallel
Strand 3
A
839 844anti-parallel
Strand 4
A
833 835anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 702first strand
Strand 2
A
710 717anti-parallel
Strand 3
A
812 819anti-parallel
Strand 4
A
822 829anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
947 950first strand
Strand 2
A
721 728anti-parallel
Strand 3
A
802 812anti-parallel
Strand 4
A
855 858anti-parallel
Strand 5
A
866 869anti-parallel
Strand 6
A
934 936anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 741first strand
Strand 2
A
790 795anti-parallel
Strand 3
A
761 765anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
886 888first strand
Strand 2
A
891 893anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
901 904first strand
Strand 2
A
912 915anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1038 1043first strand
Strand 2
A
998 1007anti-parallel
Strand 3
A
980 990anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1053 1055first strand
Strand 2
A
1011 1019anti-parallel
Strand 3
A
1024 1033anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 734first strand
Strand 2
A
798 803anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il