Analysis of interatomic Contacts of Structural Units in PDB entry:
5JAU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JAU entry

There is 1 chain in PDB entry 5JAU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 55THR 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5JAU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 111Right-handed alpha
Helix 2
AA2
A
114 126Right-handed alpha
Helix 3
AA3
A
160 170Right-handed alpha
Helix 4
AA4
A
192 199Right-handed alpha
Helix 5
AA5
A
210 212Right-handed 310
Helix 6
AA6
A
213 241Right-handed alpha
Helix 7
AA7
A
254 259Right-handed 310
Helix 8
AA8
A
273 286Right-handed alpha
Helix 9
AA9
A
303 307Right-handed 310
Helix 10
AB1
A
324 333Right-handed alpha
Helix 11
AB2
A
350 360Right-handed 310
Helix 12
AB3
A
362 369Right-handed alpha
Helix 13
AB4
A
376 397Right-handed alpha
Helix 14
AB5
A
401 404Right-handed 310
Helix 15
AB6
A
405 410Right-handed alpha
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There are 2 sheets in PDB entry 5JAU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
129 134anti-parallel
Strand 3
A
64 72parallel
Strand 4
A
79 87anti-parallel
Strand 5
A
173 177anti-parallel
Strand 6
A
144 150parallel
Strand 7
A
262 272parallel
Strand 8
A
291 295parallel
Strand 9
A
314 319parallel
Strand 10
A
341 346parallel
Strand 11
A
416 418anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
202 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il