Analysis of interatomic Contacts of Structural Units in PDB entry:
5JH6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JH6 entry

There is 1 chain in PDB entry 5JH6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 27GLY 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5JH6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
70 84Right-handed alpha
Helix 2
AA2
A
111 118Right-handed alpha
Helix 3
AA3
A
126 146Right-handed alpha
Helix 4
AA4
A
158 160Right-handed 310
Helix 5
AA5
A
192 196Right-handed 310
Helix 6
AA6
A
197 202Right-handed alpha
Helix 7
AA7
A
208 225Right-handed alpha
Helix 8
AA8
A
235 245Right-handed alpha
Helix 9
AA9
A
256 268Right-handed alpha
Helix 10
AB1
A
270 274Right-handed 310
Helix 11
AB2
A
276 288Right-handed alpha
Helix 12
AB3
A
289 291Right-handed 310
Helix 13
AB4
A
484 495Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5JH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
38 41first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
59 62anti-parallel
Strand 4
A
103 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 123first strand
Strand 2
A
301 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
251 252first strand
Strand 2
A
477 478parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il