Analysis of interatomic Contacts of Structural Units in PDB entry:
5JHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JHM entry

There are 2 chains in PDB entry 5JHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	THR 406
B	ILE 1	SER 405

There are 16 helices in PDB entry 5JHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	104	Right-handed 310
Helix 2	AA2	A	131	133	Right-handed 310
Helix 3	AA3	A	181	183	Right-handed 310
Helix 4	AA4	A	192	195	Right-handed 310
Helix 5	AA5	A	215	220	Right-handed alpha
Helix 6	AA6	A	238	241	Right-handed 310
Helix 7	AA7	A	261	269	Right-handed alpha
Helix 8	AA8	A	391	395	Right-handed 310
Helix 9	AA9	B	82	87	Right-handed 310
Helix 10	AB1	B	100	104	Right-handed 310
Helix 11	AB2	B	131	133	Right-handed 310
Helix 12	AB3	B	181	183	Right-handed 310
Helix 13	AB4	B	197	199	Right-handed 310
Helix 14	AB5	B	215	219	Right-handed alpha
Helix 15	AB6	B	238	241	Right-handed 310
Helix 16	AB7	B	261	269	Right-handed alpha

There are 16 sheets in PDB entry 5JHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	164	169	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	282	284	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	175	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	54	73	anti-parallel
Strand 4	A	225	227	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	201	206	anti-parallel
Strand 4	A	209	214	anti-parallel
Strand 5	A	273	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	254	257	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	357	358	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	364	365	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	396	402	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	30	34	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	282	284	anti-parallel
Strand 5	B	273	276	anti-parallel
Strand 6	B	209	214	anti-parallel
Strand 7	B	201	206	anti-parallel
Strand 8	B	109	129	anti-parallel
Strand 9	B	135	143	first strand
Strand 10	B	164	169	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	273	276	anti-parallel
Strand 6	B	282	284	anti-parallel
Strand 7	B	41	50	anti-parallel
Strand 8	B	54	73	first strand
Strand 9	B	225	227	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	288	294	anti-parallel
Strand 3	B	185	193	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	254	257	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	372	379	anti-parallel
Strand 4	B	357	358	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	364	365	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	343	346	anti-parallel
Strand 3	B	383	389	anti-parallel
Strand 4	B	396	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JHM