Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJA entry

There are 4 chains in PDB entry 5JJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 29TYR 375
B
ILE 30ARG 376
C
LYS 668ASP 675
D
LYS 668ASP 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 5JJA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
37 49Right-handed alpha
Helix 3
AA3
A
62 83Right-handed alpha
Helix 4
AA4
A
90 104Right-handed alpha
Helix 5
AA5
A
130 147Right-handed alpha
Helix 6
AA6
A
151 156Right-handed alpha
Helix 7
AA7
A
160 170Right-handed alpha
Helix 8
AA8
A
171 173Right-handed 310
Helix 9
AA9
A
175 193Right-handed alpha
Helix 10
AB1
A
196 214Right-handed alpha
Helix 11
AB2
A
220 234Right-handed alpha
Helix 12
AB3
A
240 250Right-handed alpha
Helix 13
AB4
A
252 257Right-handed 310
Helix 14
AB5
A
259 262Right-handed 310
Helix 15
AB6
A
263 278Right-handed alpha
Helix 16
AB7
A
281 293Right-handed alpha
Helix 17
AB8
A
300 314Right-handed alpha
Helix 18
AB9
A
316 336Right-handed alpha
Helix 19
AC1
A
339 348Right-handed alpha
Helix 20
AC2
A
349 351Right-handed 310
Helix 21
AC3
A
352 361Right-handed alpha
Helix 22
AC4
A
362 371Right-handed alpha
Helix 23
AC5
B
34 36Right-handed 310
Helix 24
AC6
B
37 49Right-handed alpha
Helix 25
AC7
B
62 83Right-handed alpha
Helix 26
AC8
B
90 104Right-handed alpha
Helix 27
AC9
B
130 147Right-handed alpha
Helix 28
AD1
B
151 156Right-handed alpha
Helix 29
AD2
B
160 170Right-handed alpha
Helix 30
AD3
B
171 173Right-handed 310
Helix 31
AD4
B
175 193Right-handed alpha
Helix 32
AD5
B
196 214Right-handed alpha
Helix 33
AD6
B
220 234Right-handed alpha
Helix 34
AD7
B
240 250Right-handed alpha
Helix 35
AD8
B
252 257Right-handed 310
Helix 36
AD9
B
259 278Right-handed alpha
Helix 37
AE1
B
281 293Right-handed alpha
Helix 38
AE2
B
300 314Right-handed alpha
Helix 39
AE3
B
316 336Right-handed alpha
Helix 40
AE4
B
339 348Right-handed alpha
Helix 41
AE5
B
349 351Right-handed 310
Helix 42
AE6
B
352 361Right-handed alpha
Helix 43
AE7
B
362 371Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5JJA

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il