Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJH entry

There is 1 chain in PDB entry 5JJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASP 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5JJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
31 42Right-handed alpha
Helix 3
AA3
A
53 70Right-handed alpha
Helix 4
AA4
A
166 175Right-handed alpha
Helix 5
AA5
A
183 187Right-handed 310
Helix 6
AA6
A
197 210Right-handed alpha
Helix 7
AA7
A
244 248Right-handed 310
Helix 8
AA8
A
249 259Right-handed 310
Helix 9
AA9
A
260 278Right-handed alpha
Helix 10
AB1
A
285 302Right-handed alpha
Helix 11
AB2
A
306 339Right-handed alpha
Helix 12
AB3
A
348 377Right-handed alpha
Helix 13
AB4
A
395 401Right-handed alpha
Helix 14
AB5
A
402 405Right-handed 310
Helix 15
AB6
A
431 438Right-handed alpha
Helix 16
AB7
A
440 453Right-handed alpha
Helix 17
AB8
A
461 465Right-handed 310
Helix 18
AB9
A
476 480Right-handed 310
Helix 19
AC1
A
486 501Right-handed alpha
Helix 20
AC2
A
514 524Right-handed alpha
Helix 21
AC3
A
533 535Right-handed 310
Helix 22
AC4
A
545 549Right-handed 310
Helix 23
AC5
A
564 570Right-handed alpha
Helix 24
AC6
A
571 580Right-handed alpha
Helix 25
AC7
A
586 608Right-handed alpha
Helix 26
AC8
A
620 624Right-handed 310
Helix 27
AC9
A
626 640Right-handed alpha
Helix 28
AD1
A
650 654Right-handed alpha
Helix 29
AD2
A
686 692Right-handed 310
Helix 30
AD3
A
693 703Right-handed alpha
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There are 6 sheets in PDB entry 5JJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
27 29anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
153 162parallel
Strand 3
A
142 150anti-parallel
Strand 4
A
98 102anti-parallel
Strand 5
A
108 110anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
126 134anti-parallel
Strand 3
A
112 114anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
126 134anti-parallel
Strand 3
A
121 123anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 507first strand
Strand 2
A
456 459parallel
Strand 3
A
382 387parallel
Strand 4
A
215 218parallel
Strand 5
A
177 182parallel
Strand 6
A
645 649parallel
Strand 7
A
553 556parallel
Strand 8
A
528 531parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
409 413anti-parallel
Strand 3
A
467 472anti-parallel
Strand 4
A
481 484anti-parallel
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