Analysis of interatomic Contacts of Structural Units in PDB entry:
5JL7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JL7 entry

There is 1 chain in PDB entry 5JL7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45ASN 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5JL7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 69Right-handed alpha
Helix 2
AA2
A
69 81Right-handed alpha
Helix 3
AA3
A
99 109Right-handed alpha
Helix 4
AA4
A
110 113Right-handed 310
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
137 152Right-handed alpha
Helix 7
AA7
A
154 174Right-handed alpha
Helix 8
AA8
A
175 178Right-handed 310
Helix 9
AA9
A
186 204Right-handed alpha
Helix 10
AB1
A
209 228Right-handed alpha
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
241 268Right-handed alpha
Helix 13
AB4
A
277 288Right-handed alpha
Helix 14
AB5
A
292 324Right-handed alpha
Helix 15
AB6
A
325 340Right-handed alpha
Helix 16
AB7
A
346 353Right-handed alpha
Helix 17
AB8
A
353 367Right-handed alpha
Helix 18
AB9
A
397 405Right-handed alpha
Helix 19
AC1
A
414 419Right-handed 310
Helix 20
AC2
A
432 436Right-handed 310
Helix 21
AC3
A
439 457Right-handed alpha
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There are 4 sheets in PDB entry 5JL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
393 396parallel
Strand 4
A
373 376anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
490 494anti-parallel
Strand 3
A
458 462anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
386 388anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 475first strand
Strand 2
A
479 481anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il