Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JPV entry

There are 2 chains in PDB entry 5JPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 153LEU 280
B
 CYS 153LEU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5JPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 184Right-handed alpha
Helix 2
AA2
A
193 205Right-handed alpha
Helix 3
AA3
B
173 184Right-handed alpha
Helix 4
AA4
B
193 205Right-handed alpha
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There are 4 sheets in PDB entry 5JPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
163 167anti-parallel
Strand 3
A
273 279anti-parallel
Strand 4
A
209 214parallel
Strand 5
A
221 222anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
273 279anti-parallel
Strand 3
A
209 214parallel
Strand 4
A
254 257anti-parallel
Strand 5
A
263 266anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
163 167anti-parallel
Strand 3
B
273 279anti-parallel
Strand 4
B
209 214parallel
Strand 5
B
221 222anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
273 279anti-parallel
Strand 3
B
209 214parallel
Strand 4
B
254 257anti-parallel
Strand 5
B
263 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il