Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JRQ entry

There are 2 chains in PDB entry 5JRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 447ARG 719
B
 PHE 447GLU 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5JRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
447 451Right-handed 310
Helix 2
AA2
A
453 457Right-handed 310
Helix 3
AA3
A
491 506Right-handed alpha
Helix 4
AA4
A
536 543Right-handed alpha
Helix 5
AA5
A
549 570Right-handed alpha
Helix 6
AA6
A
578 580Right-handed 310
Helix 7
AA7
A
597 603Right-handed alpha
Helix 8
AA8
A
616 620Right-handed 310
Helix 9
AA9
A
621 626Right-handed alpha
Helix 10
AB1
A
634 652Right-handed alpha
Helix 11
AB2
A
661 671Right-handed alpha
Helix 12
AB3
A
677 681Right-handed 310
Helix 13
AB4
A
686 697Right-handed alpha
Helix 14
AB5
A
700 704Right-handed 310
Helix 15
AB6
A
706 719Right-handed alpha
Helix 16
AB7
B
447 451Right-handed 310
Helix 17
AB8
B
453 457Right-handed 310
Helix 18
AB9
B
491 506Right-handed alpha
Helix 19
AC1
B
536 543Right-handed alpha
Helix 20
AC2
B
549 570Right-handed alpha
Helix 21
AC3
B
578 580Right-handed 310
Helix 22
AC4
B
621 626Right-handed alpha
Helix 23
AC5
B
634 652Right-handed alpha
Helix 24
AC6
B
666 671Right-handed alpha
Helix 25
AC7
B
677 681Right-handed 310
Helix 26
AC8
B
686 697Right-handed alpha
Helix 27
AC9
B
700 704Right-handed 310
Helix 28
AD1
B
706 720Right-handed alpha
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There are 4 sheets in PDB entry 5JRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 465first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
479 485anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
590 592anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 464first strand
Strand 2
B
471 475anti-parallel
Strand 3
B
479 484anti-parallel
Strand 4
B
526 530anti-parallel
Strand 5
B
516 520anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 584first strand
Strand 2
B
590 592anti-parallel
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