Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JRS entry

There are 2 chains in PDB entry 5JRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 395ASP 656
B
 MET 395MET 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5JRS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
398 400Right-handed 310
Helix 2
AA2
A
438 451Right-handed alpha
Helix 3
AA3
A
481 488Right-handed alpha
Helix 4
AA4
A
494 515Right-handed alpha
Helix 5
AA5
A
523 525Right-handed 310
Helix 6
AA6
A
541 546Right-handed 310
Helix 7
AA7
A
548 553Right-handed alpha
Helix 8
AA8
A
560 564Right-handed 310
Helix 9
AA9
A
565 572Right-handed alpha
Helix 10
AB1
A
575 592Right-handed alpha
Helix 11
AB2
A
602 612Right-handed alpha
Helix 12
AB3
A
623 633Right-handed alpha
Helix 13
AB4
A
637 641Right-handed 310
Helix 14
AB5
A
643 656Right-handed alpha
Helix 15
AB6
B
398 400Right-handed 310
Helix 16
AB7
B
438 451Right-handed alpha
Helix 17
AB8
B
481 488Right-handed alpha
Helix 18
AB9
B
494 515Right-handed alpha
Helix 19
AC1
B
523 525Right-handed 310
Helix 20
AC2
B
541 546Right-handed 310
Helix 21
AC3
B
558 564Right-handed 310
Helix 22
AC4
B
565 572Right-handed alpha
Helix 23
AC5
B
575 592Right-handed alpha
Helix 24
AC6
B
602 612Right-handed alpha
Helix 25
AC7
B
623 633Right-handed alpha
Helix 26
AC8
B
637 641Right-handed 310
Helix 27
AC9
B
643 655Right-handed alpha
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There are 4 sheets in PDB entry 5JRS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 410first strand
Strand 2
A
415 421anti-parallel
Strand 3
A
425 432anti-parallel
Strand 4
A
470 475anti-parallel
Strand 5
A
460 464anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
535 537anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 410first strand
Strand 2
B
415 421anti-parallel
Strand 3
B
425 431anti-parallel
Strand 4
B
471 475anti-parallel
Strand 5
B
460 464anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 529first strand
Strand 2
B
535 537anti-parallel
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