Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JRW entry

There are 4 chains in PDB entry 5JRW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 17	LYS 349
B	LEU 17	LYS 349
C	THR 16	LYS 349
D	LEU 12	GLU 204

There are 52 helices in PDB entry 5JRW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	56	Right-handed 310
Helix 2	AA2	A	69	81	Right-handed alpha
Helix 3	AA3	A	83	92	Right-handed alpha
Helix 4	AA4	A	147	156	Right-handed alpha
Helix 5	AA5	A	165	201	Right-handed alpha
Helix 6	AA6	A	206	238	Right-handed alpha
Helix 7	AA7	A	247	273	Right-handed alpha
Helix 8	AA8	A	274	311	Right-handed alpha
Helix 9	AA9	A	318	323	Right-handed 310
Helix 10	AB1	A	326	345	Right-handed alpha
Helix 11	AB2	B	46	56	Right-handed 310
Helix 12	AB3	B	69	81	Right-handed alpha
Helix 13	AB4	B	83	92	Right-handed alpha
Helix 14	AB5	B	147	156	Right-handed alpha
Helix 15	AB6	B	160	164	Right-handed 310
Helix 16	AB7	B	165	199	Right-handed alpha
Helix 17	AB8	B	204	238	Right-handed alpha
Helix 18	AB9	B	247	273	Right-handed alpha
Helix 19	AC1	B	274	311	Right-handed alpha
Helix 20	AC2	B	318	323	Right-handed alpha
Helix 21	AC3	B	326	345	Right-handed alpha
Helix 22	AC4	C	46	56	Right-handed 310
Helix 23	AC5	C	69	81	Right-handed alpha
Helix 24	AC6	C	83	92	Right-handed alpha
Helix 25	AC7	C	147	156	Right-handed alpha
Helix 26	AC8	C	165	201	Right-handed alpha
Helix 27	AC9	C	206	238	Right-handed alpha
Helix 28	AD1	C	247	273	Right-handed alpha
Helix 29	AD2	C	274	311	Right-handed alpha
Helix 30	AD3	C	318	322	Right-handed 310
Helix 31	AD4	C	325	345	Right-handed alpha
Helix 32	AD5	D	46	56	Right-handed 310
Helix 33	AD6	D	69	81	Right-handed alpha
Helix 34	AD7	D	83	92	Right-handed alpha
Helix 35	AD8	D	147	156	Right-handed alpha
Helix 36	AD9	D	165	202	Right-handed alpha
Helix 37	AE1	D	204	238	Right-handed alpha
Helix 38	AE2	D	247	273	Right-handed alpha
Helix 39	AE3	D	274	311	Right-handed alpha
Helix 40	AE4	D	318	323	Right-handed alpha
Helix 41	AE5	D	325	345	Right-handed alpha
Helix 42	AE6	E	46	56	Right-handed 310
Helix 43	AE7	E	69	81	Right-handed alpha
Helix 44	AE8	E	83	92	Right-handed alpha
Helix 45	AE9	E	147	156	Right-handed alpha
Helix 46	AF1	E	160	164	Right-handed 310
Helix 47	AF2	E	165	199	Right-handed alpha
Helix 48	AF3	E	204	238	Right-handed alpha
Helix 49	AF4	E	247	273	Right-handed alpha
Helix 50	AF5	E	274	311	Right-handed alpha
Helix 51	AF6	E	318	323	Right-handed alpha
Helix 52	AF7	E	326	345	Right-handed alpha

There are 5 sheets in PDB entry 5JRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	135	140	parallel
Strand 5	A	121	132	anti-parallel
Strand 6	A	105	116	anti-parallel
Strand 7	A	98	101	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	140	parallel
Strand 5	B	121	132	anti-parallel
Strand 6	B	105	116	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	44	first strand
Strand 2	C	28	34	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	135	140	parallel
Strand 5	C	121	132	anti-parallel
Strand 6	C	105	116	anti-parallel
Strand 7	C	98	101	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	28	34	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	135	140	parallel
Strand 5	D	121	132	anti-parallel
Strand 6	D	105	116	anti-parallel
Strand 7	D	98	101	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	28	34	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	135	140	parallel
Strand 5	E	121	132	anti-parallel
Strand 6	E	105	116	anti-parallel
Strand 7	E	98	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JRW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRW