Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JSJ entry

There are 2 chains in PDB entry 5JSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 49VAL 259
B
GLY 48VAL 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 5JSJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
125 133Right-handed alpha
Helix 2
AA2
A
180 187Right-handed alpha
Helix 3
AA3
B
125 133Right-handed alpha
Helix 4
AA4
B
180 187Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5JSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 101first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
69 79anti-parallel
Strand 4
A
57 63anti-parallel
Strand 5
A
108 113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
177 179first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
148 158anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
217 221first strand
Strand 2
A
227 235anti-parallel
Strand 3
A
242 247anti-parallel
Strand 4
A
254 257anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
98 100first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
70 79anti-parallel
Strand 4
B
57 62anti-parallel
Strand 5
B
108 113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
173 179first strand
Strand 2
B
166 170anti-parallel
Strand 3
B
148 158anti-parallel
Strand 4
B
136 142anti-parallel
Strand 5
B
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
217 222first strand
Strand 2
B
226 235anti-parallel
Strand 3
B
242 247anti-parallel
Strand 4
B
253 257anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il