Analysis of interatomic Contacts of Structural Units in PDB entry:
5JTV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JTV entry

There are 4 chains in PDB entry 5JTV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 209	ASN 1102
B	MET 1	GLY 76
C	LYS 209	ASN 1102
D	MET 1	GLN 40

There are 91 helices in PDB entry 5JTV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	222	234	Right-handed alpha
Helix 2	AA2	A	235	244	Right-handed alpha
Helix 3	AA3	A	255	270	Right-handed alpha
Helix 4	AA4	A	276	283	Right-handed alpha
Helix 5	AA5	A	288	292	Right-handed 310
Helix 6	AA6	A	295	311	Right-handed alpha
Helix 7	AA7	A	318	325	Right-handed alpha
Helix 8	AA8	A	359	369	Right-handed alpha
Helix 9	AA9	A	374	378	Right-handed 310
Helix 10	AB1	A	489	494	Right-handed alpha
Helix 11	AB2	A	495	498	Right-handed 310
Helix 12	AB3	A	506	509	Right-handed 310
Helix 13	AB4	A	523	528	Right-handed alpha
Helix 14	AB5	A	537	549	Right-handed alpha
Helix 15	AB6	A	550	552	Right-handed 310
Helix 16	AB7	A	917	927	Right-handed alpha
Helix 17	AB8	A	958	962	Right-handed 310
Helix 18	AB9	A	976	980	Right-handed 310
Helix 19	AC1	A	1016	1029	Right-handed alpha
Helix 20	AC2	A	1031	1036	Right-handed alpha
Helix 21	AC3	A	1059	1064	Right-handed 310
Helix 22	AC4	B	22	35	Right-handed alpha
Helix 23	AC5	B	55	60	Right-handed 310
Helix 24	AC6	C	222	234	Right-handed alpha
Helix 25	AC7	C	235	244	Right-handed alpha
Helix 26	AC8	C	255	270	Right-handed alpha
Helix 27	AC9	C	276	283	Right-handed alpha
Helix 28	AD1	C	288	292	Right-handed 310
Helix 29	AD2	C	295	312	Right-handed alpha
Helix 30	AD3	C	318	325	Right-handed alpha
Helix 31	AD4	C	359	369	Right-handed alpha
Helix 32	AD5	C	374	378	Right-handed 310
Helix 33	AD6	C	434	437	Right-handed 310
Helix 34	AD7	C	489	494	Right-handed alpha
Helix 35	AD8	C	495	498	Right-handed 310
Helix 36	AD9	C	506	511	Right-handed 310
Helix 37	AE1	C	523	528	Right-handed alpha
Helix 38	AE2	C	537	550	Right-handed alpha
Helix 39	AE3	C	917	927	Right-handed alpha
Helix 40	AE4	C	958	962	Right-handed 310
Helix 41	AE5	C	976	980	Right-handed 310
Helix 42	AE6	C	1016	1029	Right-handed alpha
Helix 43	AE7	C	1031	1037	Right-handed alpha
Helix 44	AE8	C	1059	1064	Right-handed 310
Helix 45	AE9	D	22	35	Right-handed alpha
Helix 46	AF1	D	37	41	Right-handed 310
Helix 47	AF2	D	56	60	Right-handed 310
Helix 48	AF3	E	222	234	Right-handed alpha
Helix 49	AF4	E	235	244	Right-handed alpha
Helix 50	AF5	E	255	270	Right-handed alpha
Helix 51	AF6	E	276	283	Right-handed alpha
Helix 52	AF7	E	288	292	Right-handed 310
Helix 53	AF8	E	295	311	Right-handed alpha
Helix 54	AF9	E	318	325	Right-handed alpha
Helix 55	AG1	E	359	369	Right-handed alpha
Helix 56	AG2	E	374	378	Right-handed 310
Helix 57	AG3	E	489	494	Right-handed alpha
Helix 58	AG4	E	495	498	Right-handed 310
Helix 59	AG5	E	523	528	Right-handed alpha
Helix 60	AG6	E	537	554	Right-handed alpha
Helix 61	AG7	E	917	929	Right-handed alpha
Helix 62	AG8	E	958	962	Right-handed 310
Helix 63	AG9	E	976	980	Right-handed 310
Helix 64	AH1	E	1016	1029	Right-handed alpha
Helix 65	AH2	E	1031	1036	Right-handed alpha
Helix 66	AH3	E	1059	1063	Right-handed 310
Helix 67	AH4	F	22	35	Right-handed alpha
Helix 68	AH5	F	37	41	Right-handed 310
Helix 69	AH6	F	55	60	Right-handed 310
Helix 70	AH7	G	222	234	Right-handed alpha
Helix 71	AH8	G	235	244	Right-handed alpha
Helix 72	AH9	G	255	270	Right-handed alpha
Helix 73	AI1	G	276	283	Right-handed alpha
Helix 74	AI2	G	288	292	Right-handed 310
Helix 75	AI3	G	295	311	Right-handed alpha
Helix 76	AI4	G	318	325	Right-handed alpha
Helix 77	AI5	G	359	369	Right-handed alpha
Helix 78	AI6	G	374	378	Right-handed 310
Helix 79	AI7	G	489	494	Right-handed alpha
Helix 80	AI8	G	495	498	Right-handed 310
Helix 81	AI9	G	523	528	Right-handed alpha
Helix 82	AJ1	G	537	554	Right-handed alpha
Helix 83	AJ2	G	917	929	Right-handed alpha
Helix 84	AJ3	G	958	962	Right-handed 310
Helix 85	AJ4	G	976	980	Right-handed 310
Helix 86	AJ5	G	1016	1029	Right-handed alpha
Helix 87	AJ6	G	1031	1037	Right-handed alpha
Helix 88	AJ7	G	1059	1064	Right-handed alpha
Helix 89	AJ8	H	22	35	Right-handed alpha
Helix 90	AJ9	H	37	41	Right-handed 310
Helix 91	AK1	H	55	60	Right-handed 310

There are 32 sheets in PDB entry 5JTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	347	first strand
Strand 2	A	326	334	anti-parallel
Strand 3	A	389	395	anti-parallel
Strand 4	A	371	373	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	401	407	parallel
Strand 3	A	511	520	anti-parallel
Strand 4	A	447	459	anti-parallel
Strand 5	A	430	432	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	401	407	parallel
Strand 3	A	511	520	anti-parallel
Strand 4	A	447	459	anti-parallel
Strand 5	A	462	469	anti-parallel
Strand 6	A	478	481	anti-parallel
Strand 7	A	484	487	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	386	387	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	417	420	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	905	910	first strand
Strand 2	A	894	899	anti-parallel
Strand 3	A	968	974	parallel
Strand 4	A	939	945	anti-parallel
Strand 5	A	948	953	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1002	1011	first strand
Strand 2	A	988	995	anti-parallel
Strand 3	A	1076	1080	parallel
Strand 4	A	1039	1044	anti-parallel
Strand 5	A	1047	1050	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	66	70	parallel
Strand 4	B	42	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	326	334	anti-parallel
Strand 3	C	389	395	anti-parallel
Strand 4	C	371	373	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	401	407	parallel
Strand 3	C	512	520	anti-parallel
Strand 4	C	447	459	anti-parallel
Strand 5	C	430	432	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	401	407	parallel
Strand 3	C	512	520	anti-parallel
Strand 4	C	447	459	anti-parallel
Strand 5	C	462	469	anti-parallel
Strand 6	C	478	481	anti-parallel
Strand 7	C	484	487	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	386	387	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	417	420	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	905	910	first strand
Strand 2	C	894	899	anti-parallel
Strand 3	C	968	974	parallel
Strand 4	C	939	945	anti-parallel
Strand 5	C	948	952	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1002	1012	first strand
Strand 2	C	987	995	anti-parallel
Strand 3	C	1076	1080	parallel
Strand 4	C	1039	1044	anti-parallel
Strand 5	C	1047	1050	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	347	first strand
Strand 2	E	326	334	anti-parallel
Strand 3	E	389	395	anti-parallel
Strand 4	E	371	373	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	353	first strand
Strand 2	E	401	407	parallel
Strand 3	E	511	520	anti-parallel
Strand 4	E	447	459	anti-parallel
Strand 5	E	430	432	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	353	first strand
Strand 2	E	401	407	parallel
Strand 3	E	511	520	anti-parallel
Strand 4	E	447	459	anti-parallel
Strand 5	E	462	469	anti-parallel
Strand 6	E	478	481	anti-parallel
Strand 7	E	484	487	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	380	first strand
Strand 2	E	386	387	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	412	first strand
Strand 2	E	417	420	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	905	910	first strand
Strand 2	E	894	899	anti-parallel
Strand 3	E	969	974	parallel
Strand 4	E	939	945	anti-parallel
Strand 5	E	948	953	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1002	1012	first strand
Strand 2	E	987	995	anti-parallel
Strand 3	E	1076	1080	parallel
Strand 4	E	1039	1044	anti-parallel
Strand 5	E	1047	1050	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	16	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	66	70	parallel
Strand 4	F	42	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	340	347	first strand
Strand 2	G	326	334	anti-parallel
Strand 3	G	389	395	anti-parallel
Strand 4	G	371	373	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	353	first strand
Strand 2	G	401	407	parallel
Strand 3	G	512	520	anti-parallel
Strand 4	G	447	457	anti-parallel
Strand 5	G	430	432	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	353	first strand
Strand 2	G	401	407	parallel
Strand 3	G	512	520	anti-parallel
Strand 4	G	447	457	anti-parallel
Strand 5	G	464	469	anti-parallel
Strand 6	G	478	481	anti-parallel
Strand 7	G	484	487	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	380	first strand
Strand 2	G	386	387	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	409	412	first strand
Strand 2	G	417	420	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	905	910	first strand
Strand 2	G	894	899	anti-parallel
Strand 3	G	969	974	parallel
Strand 4	G	939	945	anti-parallel
Strand 5	G	948	953	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1002	1012	first strand
Strand 2	G	987	995	anti-parallel
Strand 3	G	1076	1080	parallel
Strand 4	G	1039	1044	anti-parallel
Strand 5	G	1047	1050	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	2	6	anti-parallel
Strand 3	H	66	70	parallel
Strand 4	H	42	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JTV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JTV