Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JZI entry

There are 5 chains in PDB entry 5JZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LEU 272
B
 MET 0MET 99
C
 LYS 1VAL 10
F
 GLY 1GLU 275
G
 MET 0MET 0
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5JZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 85Right-handed alpha
Helix 2
AA2
A
139 150Right-handed alpha
Helix 3
AA3
A
151 162Right-handed alpha
Helix 4
AA4
A
162 175Right-handed alpha
Helix 5
AA5
A
175 180Right-handed alpha
Helix 6
AA6
F
56 85Right-handed alpha
Helix 7
AA7
F
139 150Right-handed alpha
Helix 8
AA8
F
151 162Right-handed alpha
Helix 9
AA9
F
162 175Right-handed alpha
Helix 10
AB1
F
175 180Right-handed alpha
Helix 11
AB2
D
88 92Right-handed 310
Helix 12
AB3
E
82 86Right-handed 310
Helix 13
AB4
E
113 117Right-handed 310
Helix 14
AB5
E
128 136Right-handed alpha
Helix 15
AB6
E
195 199Right-handed alpha
Helix 16
AB7
I
88 92Right-handed 310
Helix 17
AB8
J
82 86Right-handed 310
Helix 18
AB9
J
113 117Right-handed 310
Helix 19
AC1
J
128 136Right-handed alpha
Helix 20
AC2
J
195 199Right-handed alpha
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There are 39 sheets in PDB entry 5JZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
199 208anti-parallel
Strand 3
A
241 244anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
79 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 47first strand
Strand 2
F
31 37anti-parallel
Strand 3
F
21 28anti-parallel
Strand 4
F
3 12anti-parallel
Strand 5
F
94 103anti-parallel
Strand 6
F
109 118anti-parallel
Strand 7
F
121 126anti-parallel
Strand 8
F
133 135anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
186 188first strand
Strand 2
F
200 208anti-parallel
Strand 3
F
191 192anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
186 188first strand
Strand 2
F
200 208anti-parallel
Strand 3
F
241 245anti-parallel
Strand 4
F
234 235anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
214 218first strand
Strand 2
F
258 262anti-parallel
Strand 3
F
270 272anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 11first strand
Strand 2
G
21 30anti-parallel
Strand 3
G
62 70anti-parallel
Strand 4
G
50 51anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 11first strand
Strand 2
G
21 30anti-parallel
Strand 3
G
62 70anti-parallel
Strand 4
G
55 56anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 38first strand
Strand 2
G
81 84anti-parallel
Strand 3
G
91 92anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
40 41first strand
Strand 2
G
44 45anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
I
2 5anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 10first strand
Strand 2
D
29 30anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
111 116parallel
Strand 3
D
94 100anti-parallel
Strand 4
D
38 44anti-parallel
Strand 5
D
51 57anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
111 116parallel
Strand 3
D
94 100anti-parallel
Strand 4
D
105 107anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 26first strand
Strand 2
D
79 84anti-parallel
Strand 3
D
69 74anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 130first strand
Strand 2
D
138 143anti-parallel
Strand 3
D
178 183anti-parallel
Strand 4
D
159 161anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 169first strand
Strand 2
D
174 176anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
76 78anti-parallel
Strand 4
E
64 66anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
106 111parallel
Strand 3
E
88 94anti-parallel
Strand 4
E
31 37anti-parallel
Strand 5
E
43 49anti-parallel
Strand 6
E
56 57anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
106 111parallel
Strand 3
E
88 94anti-parallel
Strand 4
E
100 102anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 125first strand
Strand 2
E
137 147anti-parallel
Strand 3
E
185 194anti-parallel
Strand 4
E
167 169anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 125first strand
Strand 2
E
137 147anti-parallel
Strand 3
E
185 194anti-parallel
Strand 4
E
174 175anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
161 163first strand
Strand 2
E
152 158anti-parallel
Strand 3
E
204 211anti-parallel
Strand 4
E
230 237anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
9 10first strand
Strand 2
I
29 30anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
15 19first strand
Strand 2
I
111 116parallel
Strand 3
I
94 100anti-parallel
Strand 4
I
38 44anti-parallel
Strand 5
I
51 57anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
15 19first strand
Strand 2
I
111 116parallel
Strand 3
I
94 100anti-parallel
Strand 4
I
105 107anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
24 26first strand
Strand 2
I
79 84anti-parallel
Strand 3
I
69 74anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
125 130first strand
Strand 2
I
138 143anti-parallel
Strand 3
I
174 183anti-parallel
Strand 4
I
159 161anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
125 130first strand
Strand 2
I
138 143anti-parallel
Strand 3
I
174 183anti-parallel
Strand 4
I
165 169anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
4 6first strand
Strand 2
J
23 25anti-parallel
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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 14first strand
Strand 2
J
106 111parallel
Strand 3
J
87 94anti-parallel
Strand 4
J
31 37anti-parallel
Strand 5
J
43 49anti-parallel
Strand 6
J
56 57anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 14first strand
Strand 2
J
106 111parallel
Strand 3
J
87 94anti-parallel
Strand 4
J
101 102anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
19 21first strand
Strand 2
J
76 78anti-parallel
Strand 3
J
64 66anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
121 125first strand
Strand 2
J
137 147anti-parallel
Strand 3
J
185 194anti-parallel
Strand 4
J
167 169anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
121 125first strand
Strand 2
J
137 147anti-parallel
Strand 3
J
185 194anti-parallel
Strand 4
J
174 175anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
161 163first strand
Strand 2
J
152 158anti-parallel
Strand 3
J
204 211anti-parallel
Strand 4
J
230 237anti-parallel
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