Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K0W entry

There are 2 chains in PDB entry 5K0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 17ASP 286
B
 VAL 20LYS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5K0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
72 84Right-handed alpha
Helix 3
AA3
A
87 89Right-handed 310
Helix 4
AA4
A
100 105Right-handed alpha
Helix 5
AA5
A
106 115Right-handed alpha
Helix 6
AA6
A
124 130Right-handed alpha
Helix 7
AA7
A
137 142Right-handed 310
Helix 8
AA8
A
217 231Right-handed alpha
Helix 9
AA9
A
241 245Right-handed 310
Helix 10
AB1
A
246 251Right-handed alpha
Helix 11
AB2
A
258 263Right-handed 310
Helix 12
AB3
A
264 285Right-handed alpha
Helix 13
AB4
B
28 32Right-handed 310
Helix 14
AB5
B
72 84Right-handed alpha
Helix 15
AB6
B
87 89Right-handed 310
Helix 16
AB7
B
100 105Right-handed alpha
Helix 17
AB8
B
106 115Right-handed alpha
Helix 18
AB9
B
124 130Right-handed alpha
Helix 19
AC1
B
137 142Right-handed 310
Helix 20
AC2
B
217 231Right-handed alpha
Helix 21
AC3
B
241 245Right-handed 310
Helix 22
AC4
B
246 251Right-handed alpha
Helix 23
AC5
B
258 263Right-handed 310
Helix 24
AC6
B
264 287Right-handed alpha
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There are 4 sheets in PDB entry 5K0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
44 46anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
62 66anti-parallel
Strand 5
A
91 95parallel
Strand 6
A
117 121parallel
Strand 7
A
152 154parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
180 187anti-parallel
Strand 4
A
192 198anti-parallel
Strand 5
A
236 239parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
44 46anti-parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
62 66anti-parallel
Strand 5
B
91 95parallel
Strand 6
B
117 121parallel
Strand 7
B
152 154parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
165 171anti-parallel
Strand 3
B
180 187anti-parallel
Strand 4
B
192 198anti-parallel
Strand 5
B
236 239parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il