Analysis of interatomic Contacts of Structural Units in PDB entry:
5K13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K13 entry

There is 1 chain in PDB entry 5K13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 181GLU 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5K13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 197Right-handed alpha
Helix 2
AA2
A
201 205Right-handed 310
Helix 3
AA3
A
221 246Right-handed alpha
Helix 4
AA4
A
248 252Right-handed 310
Helix 5
AA5
A
253 275Right-handed alpha
Helix 6
AA6
A
294 301Right-handed alpha
Helix 7
AA7
A
302 304Right-handed 310
Helix 8
AA8
A
305 317Right-handed alpha
Helix 9
AA9
A
318 320Right-handed 310
Helix 10
AB1
A
322 335Right-handed alpha
Helix 11
AB2
A
344 367Right-handed alpha
Helix 12
AB3
A
372 402Right-handed alpha
Helix 13
AB4
A
403 406Right-handed 310
Helix 14
AB5
A
409 415Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5K13.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
283 285anti-parallel
Strand 3
A
291 293anti-parallel
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