Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5L entry

There are 7 chains in PDB entry 5K5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 1 G 11
B
 A 2 C 11
C
 G 1 G 11
D
 C 1 C 11
E
 LYS 436ASN 491
F
 LYS 436GLU 492
G
 GLU 408ASN 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5K5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
448 461Right-handed alpha
Helix 2
AA2
E
478 488Right-handed alpha
Helix 3
AA3
E
489 491Right-handed 310
Helix 4
AA4
F
449 460Right-handed alpha
Helix 5
AA5
F
479 491Right-handed alpha
Helix 6
AA6
G
418 429Right-handed alpha
Helix 7
AA7
G
430 434Right-handed 310
Helix 8
AA8
G
448 460Right-handed alpha
Helix 9
AA9
G
478 489Right-handed alpha
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There are 5 sheets in PDB entry 5K5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
437 438first strand
Strand 2
E
445 446anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
467 468first strand
Strand 2
E
475 476anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
462 468first strand
Strand 2
F
475 478anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
437 438first strand
Strand 2
G
445 446anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
467 468first strand
Strand 2
G
475 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il