Analysis of interatomic Contacts of Structural Units in PDB entry:
5K7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K7W entry

There are 2 chains in PDB entry 5K7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 368GLY 572
B
 HIS 116SER 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5K7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
382 387Right-handed 310
Helix 2
AA2
A
410 416Right-handed alpha
Helix 3
AA3
A
418 423Right-handed 310
Helix 4
AA4
A
435 447Right-handed alpha
Helix 5
AA5
A
515 525Right-handed alpha
Helix 6
AA6
A
536 540Right-handed 310
Helix 7
AA7
A
558 569Right-handed alpha
Helix 8
AA8
B
118 127Right-handed alpha
Helix 9
AA9
B
129 134Right-handed 310
Helix 10
AB1
B
140 144Right-handed 310
Helix 11
AB2
B
146 164Right-handed alpha
Helix 12
AB3
B
178 182Right-handed 310
Helix 13
AB4
B
195 201Right-handed alpha
Helix 14
AB5
B
212 218Right-handed alpha
Helix 15
AB6
B
220 223Right-handed 310
Helix 16
AB7
B
239 252Right-handed alpha
Helix 17
AB8
B
328 338Right-handed alpha
Helix 18
AB9
B
349 353Right-handed 310
Helix 19
AC1
B
370 377Right-handed alpha
Helix 20
AC2
B
389 396Right-handed alpha
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There are 2 sheets in PDB entry 5K7W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 506first strand
Strand 2
A
450 460parallel
Strand 3
A
480 488anti-parallel
Strand 4
A
426 432anti-parallel
Strand 5
A
391 394parallel
Strand 6
A
530 533parallel
Strand 7
A
544 548parallel
Strand 8
A
372 375parallel
Strand 9
A
554 555anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
358 361parallel
Strand 3
B
343 346parallel
Strand 4
B
186 191parallel
Strand 5
B
225 234parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
254 264anti-parallel
Strand 8
B
313 317parallel
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