Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K8U entry

There is 1 chain in PDB entry 5K8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 173ALA 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5K8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
180 185Right-handed 310
Helix 2
AA2
A
203 215Right-handed alpha
Helix 3
AA3
A
225 236Right-handed alpha
Helix 4
AA4
A
263 271Right-handed alpha
Helix 5
AA5
A
291 307Right-handed alpha
Helix 6
AA6
A
349 354Right-handed alpha
Helix 7
AA7
A
365 379Right-handed alpha
Helix 8
AA8
A
390 396Right-handed alpha
Helix 9
AA9
A
397 400Right-handed 310
Helix 10
AB1
A
410 414Right-handed 310
Helix 11
AB2
A
449 458Right-handed alpha
Helix 12
AB3
A
484 495Right-handed alpha
Helix 13
AB4
A
508 515Right-handed 310
Helix 14
AB5
A
525 538Right-handed alpha
Helix 15
AB6
A
542 552Right-handed alpha
Helix 16
AB7
A
559 563Right-handed 310
Helix 17
AB8
A
566 570Right-handed 310
Helix 18
AB9
A
596 600Right-handed 310
Helix 19
AC1
A
602 614Right-handed alpha
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There are 5 sheets in PDB entry 5K8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
311 315parallel
Strand 3
A
281 285parallel
Strand 4
A
219 223parallel
Strand 5
A
258 262parallel
Strand 6
A
241 243parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 337first strand
Strand 2
A
470 473parallel
Strand 3
A
422 425parallel
Strand 4
A
359 362parallel
Strand 5
A
405 408parallel
Strand 6
A
383 386parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 435first strand
Strand 2
A
439 447anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
576 577anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 581first strand
Strand 2
A
587 589anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il