Analysis of interatomic Contacts of Structural Units in PDB entry:
5K9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K9W entry

There is 1 chain in PDB entry 5K9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5K9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
37 44Right-handed 310
Helix 4
AA4
A
52 54Right-handed 310
Helix 5
AA5
A
91 103Right-handed alpha
Helix 6
AA6
A
187 201Right-handed alpha
Helix 7
AA7
A
219 239Right-handed alpha
Helix 8
AA8
A
240 244Right-handed 310
Helix 9
AA9
A
245 255Right-handed alpha
Helix 10
AB1
A
263 282Right-handed alpha
Helix 11
AB2
A
285 296Right-handed alpha
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There are 2 sheets in PDB entry 5K9W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
211 214parallel
Strand 5
A
106 109parallel
Strand 6
A
167 176parallel
Strand 7
A
153 162anti-parallel
Strand 8
A
140 149anti-parallel
Strand 9
A
133 135anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
118 119anti-parallel
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