Analysis of interatomic Contacts of Structural Units in PDB entry:
5KA4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KA4 entry

There is 1 chain in PDB entry 5KA4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ILE 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5KA4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
37 44Right-handed 310
Helix 4
AA4
A
91 102Right-handed alpha
Helix 5
AA5
A
188 201Right-handed alpha
Helix 6
AA6
A
220 238Right-handed alpha
Helix 7
AA7
A
240 244Right-handed 310
Helix 8
AA8
A
245 255Right-handed alpha
Helix 9
AA9
A
263 281Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5KA4.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
211 214parallel
Strand 5
A
106 109parallel
Strand 6
A
167 176parallel
Strand 7
A
153 162anti-parallel
Strand 8
A
140 149anti-parallel
Strand 9
A
133 135anti-parallel
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