Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KBR entry

There are 2 chains in PDB entry 5KBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 255LYS 542
B
 GLU 255LYS 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5KBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 322Right-handed alpha
Helix 2
AA2
A
351 359Right-handed alpha
Helix 3
AA3
A
362 383Right-handed alpha
Helix 4
AA4
A
391 393Right-handed 310
Helix 5
AA5
A
427 431Right-handed 310
Helix 6
AA6
A
432 437Right-handed alpha
Helix 7
AA7
A
444 460Right-handed alpha
Helix 8
AA8
A
468 480Right-handed alpha
Helix 9
AA9
A
486 490Right-handed 310
Helix 10
AB1
A
491 502Right-handed alpha
Helix 11
AB2
A
511 517Right-handed alpha
Helix 12
AB3
A
518 524Right-handed 310
Helix 13
AB4
A
526 529Right-handed 310
Helix 14
AB5
A
530 542Right-handed alpha
Helix 15
AB6
B
256 260Right-handed 310
Helix 16
AB7
B
265 269Right-handed alpha
Helix 17
AB8
B
315 322Right-handed alpha
Helix 18
AB9
B
351 359Right-handed alpha
Helix 19
AC1
B
362 383Right-handed alpha
Helix 20
AC2
B
391 393Right-handed 310
Helix 21
AC3
B
432 437Right-handed alpha
Helix 22
AC4
B
444 460Right-handed alpha
Helix 23
AC5
B
468 479Right-handed alpha
Helix 24
AC6
B
486 490Right-handed 310
Helix 25
AC7
B
491 502Right-handed alpha
Helix 26
AC8
B
511 516Right-handed alpha
Helix 27
AC9
B
517 524Right-handed 310
Helix 28
AD1
B
526 529Right-handed 310
Helix 29
AD2
B
530 542Right-handed alpha
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There are 4 sheets in PDB entry 5KBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
283 286anti-parallel
Strand 3
A
296 299anti-parallel
Strand 4
A
342 345anti-parallel
Strand 5
A
330 332anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
403 405anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
295 300anti-parallel
Strand 4
B
339 345anti-parallel
Strand 5
B
330 336anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
403 405anti-parallel
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