Analysis of interatomic Contacts of Structural Units in PDB entry:
5KCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KCC entry

There are 4 chains in PDB entry 5KCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 305ARG 548
B
ASN 304LEU 549
C
LYS 688SER 697
D
HIS 687GLN 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5KCC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
305 310Right-handed alpha
Helix 2
AA2
A
311 322Right-handed alpha
Helix 3
AA3
A
338 362Right-handed alpha
Helix 4
AA4
A
366 370Right-handed 310
Helix 5
AA5
A
371 395Right-handed alpha
Helix 6
AA6
A
413 418Right-handed 310
Helix 7
AA7
A
420 439Right-handed alpha
Helix 8
AA8
A
441 456Right-handed alpha
Helix 9
AA9
A
471 493Right-handed alpha
Helix 10
AB1
A
496 532Right-handed alpha
Helix 11
AB2
A
537 546Right-handed alpha
Helix 12
AB3
B
305 310Right-handed alpha
Helix 13
AB4
B
311 322Right-handed alpha
Helix 14
AB5
B
338 362Right-handed alpha
Helix 15
AB6
B
371 395Right-handed alpha
Helix 16
AB7
B
413 418Right-handed 310
Helix 17
AB8
B
421 437Right-handed alpha
Helix 18
AB9
B
441 456Right-handed alpha
Helix 19
AC1
B
474 493Right-handed alpha
Helix 20
AC2
B
496 527Right-handed alpha
Helix 21
AC3
B
537 546Right-handed alpha
Helix 22
AC4
B
547 549Right-handed 310
Helix 23
AC5
C
689 696Right-handed alpha
Helix 24
AC6
D
688 694Right-handed alpha
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There are 2 sheets in PDB entry 5KCC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il