Analysis of interatomic Contacts of Structural Units in PDB entry:
5KET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KET entry

There are 2 chains in PDB entry 5KET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7TYR 334
B
 LYS 3TYR 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5KET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 42Right-handed alpha
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
83 87Right-handed 310
Helix 6
AA6
A
88 90Right-handed 310
Helix 7
AA7
A
91 104Right-handed alpha
Helix 8
AA8
A
143 157Right-handed alpha
Helix 9
AA9
A
169 180Right-handed alpha
Helix 10
AB1
A
197 207Right-handed alpha
Helix 11
AB2
A
221 229Right-handed alpha
Helix 12
AB3
A
234 239Right-handed 310
Helix 13
AB4
A
244 255Right-handed alpha
Helix 14
AB5
A
257 268Right-handed alpha
Helix 15
AB6
A
279 288Right-handed alpha
Helix 16
AB7
A
295 305Right-handed alpha
Helix 17
AB8
A
319 324Right-handed alpha
Helix 18
AB9
B
27 42Right-handed alpha
Helix 19
AC1
B
49 53Right-handed 310
Helix 20
AC2
B
54 68Right-handed alpha
Helix 21
AC3
B
72 76Right-handed 310
Helix 22
AC4
B
83 87Right-handed 310
Helix 23
AC5
B
88 104Right-handed alpha
Helix 24
AC6
B
143 158Right-handed alpha
Helix 25
AC7
B
169 180Right-handed alpha
Helix 26
AC8
B
197 207Right-handed alpha
Helix 27
AC9
B
234 238Right-handed 310
Helix 28
AD1
B
240 243Right-handed 310
Helix 29
AD2
B
244 254Right-handed alpha
Helix 30
AD3
B
257 268Right-handed alpha
Helix 31
AD4
B
279 288Right-handed alpha
Helix 32
AD5
B
295 305Right-handed alpha
Helix 33
AD6
B
306 312Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5KET. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
15 16anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
45 47parallel
Strand 3
A
77 82parallel
Strand 4
A
108 113parallel
Strand 5
A
160 166parallel
Strand 6
A
186 190parallel
Strand 7
A
210 214parallel
Strand 8
A
272 273parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
15 17anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
77 82parallel
Strand 3
B
110 113parallel
Strand 4
B
163 166parallel
Strand 5
B
186 190parallel
Strand 6
B
210 214parallel
Strand 7
B
272 273parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
138 139anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il