Analysis of interatomic Contacts of Structural Units in PDB entry:
5KEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KEU entry

There are 2 chains in PDB entry 5KEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10ASN 315
B
 PRO 10ASN 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5KEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 50Right-handed alpha
Helix 2
AA2
A
60 70Right-handed alpha
Helix 3
AA3
A
147 154Right-handed alpha
Helix 4
AA4
A
155 164Right-handed alpha
Helix 5
AA5
A
224 240Right-handed alpha
Helix 6
AA6
A
241 243Right-handed 310
Helix 7
AA7
A
269 274Right-handed 310
Helix 8
AA8
A
310 315Right-handed alpha
Helix 9
AA9
B
35 50Right-handed alpha
Helix 10
AB1
B
60 70Right-handed alpha
Helix 11
AB2
B
147 154Right-handed alpha
Helix 12
AB3
B
155 164Right-handed alpha
Helix 13
AB4
B
224 240Right-handed alpha
Helix 14
AB5
B
241 243Right-handed 310
Helix 15
AB6
B
269 274Right-handed 310
Helix 16
AB7
B
304 315Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5KEU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
51 54parallel
Strand 4
A
255 259anti-parallel
Strand 5
A
127 134anti-parallel
Strand 6
A
279 285anti-parallel
Strand 7
A
87 94anti-parallel
Strand 8
A
83 84anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
263 266anti-parallel
Strand 3
A
142 146anti-parallel
Strand 4
A
245 248anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
299 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
51 54parallel
Strand 4
B
255 259anti-parallel
Strand 5
B
127 134anti-parallel
Strand 6
B
279 285anti-parallel
Strand 7
B
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
263 266anti-parallel
Strand 3
B
142 146anti-parallel
Strand 4
B
245 248anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
166 171anti-parallel
Strand 3
B
192 197anti-parallel
Strand 4
B
299 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
208 210anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il