Analysis of interatomic Contacts of Structural Units in PDB entry:
5KNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KNK entry

There is 1 chain in PDB entry 5KNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 4MET 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5KNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 20Right-handed alpha
Helix 2
AA2
B
21 38Right-handed alpha
Helix 3
AA3
B
39 56Right-handed alpha
Helix 4
AA4
B
60 87Right-handed alpha
Helix 5
AA5
B
89 96Right-handed alpha
Helix 6
AA6
B
102 112Right-handed alpha
Helix 7
AA7
B
125 127Right-handed 310
Helix 8
AA8
B
128 135Right-handed alpha
Helix 9
AA9
B
148 162Right-handed alpha
Helix 10
AB1
B
170 183Right-handed alpha
Helix 11
AB2
B
213 223Right-handed alpha
Helix 12
AB3
B
247 252Right-handed 310
Helix 13
AB4
B
254 273Right-handed alpha
Helix 14
AB5
B
274 277Right-handed 310
Helix 15
AB6
B
282 286Right-handed 310
Helix 16
AB7
B
297 318Right-handed alpha
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There are 2 sheets in PDB entry 5KNK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
239 245parallel
Strand 3
B
225 233anti-parallel
Strand 4
B
116 119parallel
Strand 5
B
186 189parallel
Strand 6
B
139 143parallel
Strand 7
B
165 168parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 204first strand
Strand 2
B
207 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il