Analysis of interatomic Contacts of Structural Units in PDB entry:
5KRA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KRA entry

There are 8 chains in PDB entry 5KRA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 305ARG 548
B
 SER 305LEU 549
C
 HIS 687ASP 696
D
 LYS 688ASP 696
E
 SER 305ARG 548
F
 SER 305LEU 549
G
 HIS 687ASP 696
H
 HIS 687ASP 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5KRA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
305 310Right-handed alpha
Helix 2
AA2
A
311 322Right-handed alpha
Helix 3
AA3
A
338 364Right-handed alpha
Helix 4
AA4
A
371 394Right-handed alpha
Helix 5
AA5
A
420 438Right-handed alpha
Helix 6
AA6
A
441 456Right-handed alpha
Helix 7
AA7
A
457 461Right-handed 310
Helix 8
AA8
A
473 494Right-handed alpha
Helix 9
AA9
A
496 532Right-handed alpha
Helix 10
AB1
A
537 546Right-handed alpha
Helix 11
AB2
B
306 310Right-handed 310
Helix 12
AB3
B
311 322Right-handed alpha
Helix 13
AB4
B
338 364Right-handed alpha
Helix 14
AB5
B
371 394Right-handed alpha
Helix 15
AB6
B
421 439Right-handed alpha
Helix 16
AB7
B
441 456Right-handed alpha
Helix 17
AB8
B
457 461Right-handed 310
Helix 18
AB9
B
465 493Right-handed alpha
Helix 19
AC1
B
496 532Right-handed alpha
Helix 20
AC2
B
537 549Right-handed alpha
Helix 21
AC3
C
688 696Right-handed alpha
Helix 22
AC4
D
689 694Right-handed alpha
Helix 23
AC5
E
311 322Right-handed alpha
Helix 24
AC6
E
338 363Right-handed alpha
Helix 25
AC7
E
371 394Right-handed alpha
Helix 26
AC8
E
413 416Right-handed 310
Helix 27
AC9
E
420 438Right-handed alpha
Helix 28
AD1
E
441 456Right-handed alpha
Helix 29
AD2
E
457 461Right-handed 310
Helix 30
AD3
E
473 493Right-handed alpha
Helix 31
AD4
E
496 532Right-handed alpha
Helix 32
AD5
E
537 546Right-handed alpha
Helix 33
AD6
F
311 322Right-handed alpha
Helix 34
AD7
F
338 364Right-handed alpha
Helix 35
AD8
F
371 395Right-handed alpha
Helix 36
AD9
F
421 438Right-handed alpha
Helix 37
AE1
F
441 456Right-handed alpha
Helix 38
AE2
F
470 493Right-handed alpha
Helix 39
AE3
F
496 532Right-handed alpha
Helix 40
AE4
F
537 548Right-handed alpha
Helix 41
AE5
G
688 696Right-handed alpha
Helix 42
AE6
H
688 696Right-handed alpha
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There are 4 sheets in PDB entry 5KRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
408 410anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
401 405first strand
Strand 2
E
408 411anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
401 405first strand
Strand 2
F
408 411anti-parallel
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