Analysis of interatomic Contacts of Structural Units in PDB entry:
5KRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KRJ entry

There are 4 chains in PDB entry 5KRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 304ARG 548
B
 LEU 306ARG 548
C
 HIS 687ASP 696
D
 HIS 687ASP 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
305 310Right-handed alpha
Helix 2
AA2
A
311 322Right-handed alpha
Helix 3
AA3
A
338 363Right-handed alpha
Helix 4
AA4
A
371 395Right-handed alpha
Helix 5
AA5
A
412 418Right-handed 310
Helix 6
AA6
A
421 439Right-handed alpha
Helix 7
AA7
A
441 456Right-handed alpha
Helix 8
AA8
A
473 493Right-handed alpha
Helix 9
AA9
A
496 526Right-handed alpha
Helix 10
AB1
A
527 532Right-handed alpha
Helix 11
AB2
A
537 546Right-handed alpha
Helix 12
AB3
B
306 310Right-handed 310
Helix 13
AB4
B
311 322Right-handed alpha
Helix 14
AB5
B
338 363Right-handed alpha
Helix 15
AB6
B
371 395Right-handed alpha
Helix 16
AB7
B
411 417Right-handed alpha
Helix 17
AB8
B
421 439Right-handed alpha
Helix 18
AB9
B
441 456Right-handed alpha
Helix 19
AC1
B
471 493Right-handed alpha
Helix 20
AC2
B
496 526Right-handed alpha
Helix 21
AC3
B
537 546Right-handed alpha
Helix 22
AC4
C
688 696Right-handed alpha
Helix 23
AC5
D
688 696Right-handed alpha
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There are 2 sheets in PDB entry 5KRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
408 410anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 405first strand
Strand 2
B
408 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il