Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KVH entry

There are 2 chains in PDB entry 5KVH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 126	GLU 612
B	ASP 126	GLU 612

There are 27 helices in PDB entry 5KVH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	140	154	Right-handed alpha
Helix 2	AA2	A	172	177	Right-handed 310
Helix 3	AA3	A	186	191	Right-handed alpha
Helix 4	AA4	A	207	211	Right-handed 310
Helix 5	AA5	A	267	273	Right-handed alpha
Helix 6	AA6	A	274	280	Right-handed alpha
Helix 7	AA7	A	286	298	Right-handed alpha
Helix 8	AA8	A	309	327	Right-handed alpha
Helix 9	AA9	A	345	359	Right-handed alpha
Helix 10	AB1	A	406	411	Right-handed alpha
Helix 11	AB2	A	454	469	Right-handed alpha
Helix 12	AB3	A	584	595	Right-handed alpha
Helix 13	AB4	A	600	606	Right-handed alpha
Helix 14	AB5	A	607	609	Right-handed 310
Helix 15	AB6	B	140	154	Right-handed alpha
Helix 16	AB7	B	172	181	Right-handed 310
Helix 17	AB8	B	186	191	Right-handed alpha
Helix 18	AB9	B	207	211	Right-handed 310
Helix 19	AC1	B	267	273	Right-handed alpha
Helix 20	AC2	B	274	280	Right-handed alpha
Helix 21	AC3	B	286	298	Right-handed alpha
Helix 22	AC4	B	309	325	Right-handed alpha
Helix 23	AC5	B	345	359	Right-handed alpha
Helix 24	AC6	B	406	411	Right-handed alpha
Helix 25	AC7	B	454	469	Right-handed alpha
Helix 26	AC8	B	584	595	Right-handed alpha
Helix 27	AC9	B	600	607	Right-handed alpha

There are 16 sheets in PDB entry 5KVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	229	first strand
Strand 2	A	158	163	parallel
Strand 3	A	131	137	parallel
Strand 4	A	250	258	parallel
Strand 5	A	242	245	anti-parallel
Strand 6	A	233	237	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	229	first strand
Strand 2	A	158	163	parallel
Strand 3	A	131	137	parallel
Strand 4	A	250	258	parallel
Strand 5	A	433	435	parallel
Strand 6	A	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	400	402	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	283	first strand
Strand 2	A	393	396	parallel
Strand 3	A	302	306	parallel
Strand 4	A	329	333	parallel
Strand 5	A	362	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	375	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	388	391	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	440	444	parallel
Strand 3	A	448	451	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	485	first strand
Strand 2	A	491	496	anti-parallel
Strand 3	A	572	579	anti-parallel
Strand 4	A	562	569	anti-parallel
Strand 5	A	504	509	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	158	163	parallel
Strand 3	B	131	137	parallel
Strand 4	B	250	258	parallel
Strand 5	B	242	245	anti-parallel
Strand 6	B	233	237	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	158	163	parallel
Strand 3	B	131	137	parallel
Strand 4	B	250	258	parallel
Strand 5	B	433	435	parallel
Strand 6	B	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	400	402	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	393	396	parallel
Strand 3	B	302	306	parallel
Strand 4	B	329	333	parallel
Strand 5	B	362	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	375	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	388	391	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	440	444	parallel
Strand 3	B	448	450	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	485	first strand
Strand 2	B	491	496	anti-parallel
Strand 3	B	572	579	anti-parallel
Strand 4	B	562	569	anti-parallel
Strand 5	B	504	509	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KVH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVH