Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KVI entry

There is 1 chain in PDB entry 5KVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 129GLN 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5KVI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
140 154Right-handed alpha
Helix 2
AA2
A
172 181Right-handed 310
Helix 3
AA3
A
186 191Right-handed alpha
Helix 4
AA4
A
207 211Right-handed 310
Helix 5
AA5
A
267 273Right-handed alpha
Helix 6
AA6
A
274 280Right-handed alpha
Helix 7
AA7
A
286 300Right-handed alpha
Helix 8
AA8
A
309 327Right-handed alpha
Helix 9
AA9
A
345 359Right-handed alpha
Helix 10
AB1
A
404 410Right-handed 310
Helix 11
AB2
A
454 469Right-handed alpha
Helix 12
AB3
A
516 525Right-handed alpha
Helix 13
AB4
A
528 534Right-handed alpha
Helix 14
AB5
A
584 595Right-handed alpha
Helix 15
AB6
A
600 605Right-handed alpha
Helix 16
AB7
A
605 610Right-handed alpha
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There are 9 sheets in PDB entry 5KVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
224 229first strand
Strand 2
A
158 163parallel
Strand 3
A
131 137parallel
Strand 4
A
250 258parallel
Strand 5
A
242 245anti-parallel
Strand 6
A
233 237anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
224 229first strand
Strand 2
A
158 163parallel
Strand 3
A
131 137parallel
Strand 4
A
250 258parallel
Strand 5
A
433 435parallel
Strand 6
A
428 430anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
192 194first strand
Strand 2
A
200 202anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 264first strand
Strand 2
A
400 402anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 283first strand
Strand 2
A
393 396parallel
Strand 3
A
302 306parallel
Strand 4
A
329 333parallel
Strand 5
A
362 364parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
369 375first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
388 391anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
421 422first strand
Strand 2
A
440 444parallel
Strand 3
A
448 450anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
481 485first strand
Strand 2
A
491 496anti-parallel
Strand 3
A
572 579anti-parallel
Strand 4
A
562 569anti-parallel
Strand 5
A
504 509anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 542first strand
Strand 2
A
615 618anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il