Analysis of interatomic Contacts of Structural Units in PDB entry:
5KX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KX8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 5KX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 163GLU 337
A
VAL 343MET 344
A
ARG 347ALA 459
B
SER 161GLN 341
B
VAL 343MET 344
B
ARG 347ALA 459
C
ARG 164GLU 337
C
VAL 343MET 344
C
ARG 347SER 460
D
ARG 164SER 336
D
VAL 343MET 344
D
ARG 347ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 5KX8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
169 177Right-handed alpha
Helix 2
AA2
A
223 240Right-handed alpha
Helix 3
AA3
A
269 276Right-handed alpha
Helix 4
AA4
A
277 280Right-handed 310
Helix 5
AA5
A
284 305Right-handed alpha
Helix 6
AA6
A
313 315Right-handed 310
Helix 7
AA7
A
351 355Right-handed 310
Helix 8
AA8
A
356 361Right-handed alpha
Helix 9
AA9
A
365 383Right-handed alpha
Helix 10
AB1
A
395 397Right-handed 310
Helix 11
AB2
A
398 405Right-handed alpha
Helix 12
AB3
A
409 413Right-handed 310
Helix 13
AB4
A
422 437Right-handed alpha
Helix 14
AB5
A
446 459Right-handed alpha
Helix 15
AB6
B
169 177Right-handed alpha
Helix 16
AB7
B
230 240Right-handed alpha
Helix 17
AB8
B
269 276Right-handed alpha
Helix 18
AB9
B
277 280Right-handed 310
Helix 19
AC1
B
284 305Right-handed alpha
Helix 20
AC2
B
351 355Right-handed 310
Helix 21
AC3
B
356 361Right-handed alpha
Helix 22
AC4
B
365 383Right-handed alpha
Helix 23
AC5
B
395 397Right-handed 310
Helix 24
AC6
B
398 405Right-handed alpha
Helix 25
AC7
B
409 413Right-handed 310
Helix 26
AC8
B
422 437Right-handed alpha
Helix 27
AC9
B
446 459Right-handed alpha
Helix 28
AD1
C
169 177Right-handed alpha
Helix 29
AD2
C
222 240Right-handed alpha
Helix 30
AD3
C
269 276Right-handed alpha
Helix 31
AD4
C
277 280Right-handed 310
Helix 32
AD5
C
284 305Right-handed alpha
Helix 33
AD6
C
351 355Right-handed 310
Helix 34
AD7
C
356 361Right-handed alpha
Helix 35
AD8
C
365 383Right-handed alpha
Helix 36
AD9
C
395 397Right-handed 310
Helix 37
AE1
C
398 405Right-handed alpha
Helix 38
AE2
C
409 413Right-handed 310
Helix 39
AE3
C
422 437Right-handed alpha
Helix 40
AE4
C
446 460Right-handed alpha
Helix 41
AE5
D
169 177Right-handed alpha
Helix 42
AE6
D
184 188Right-handed 310
Helix 43
AE7
D
223 240Right-handed alpha
Helix 44
AE8
D
269 276Right-handed alpha
Helix 45
AE9
D
277 280Right-handed 310
Helix 46
AF1
D
284 305Right-handed alpha
Helix 47
AF2
D
313 315Right-handed 310
Helix 48
AF3
D
351 355Right-handed 310
Helix 49
AF4
D
356 361Right-handed alpha
Helix 50
AF5
D
365 383Right-handed alpha
Helix 51
AF6
D
395 397Right-handed 310
Helix 52
AF7
D
398 405Right-handed alpha
Helix 53
AF8
D
409 413Right-handed 310
Helix 54
AF9
D
422 437Right-handed alpha
Helix 55
AG1
D
446 459Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 5KX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 167first strand
Strand 2
A
248 252parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
199 205anti-parallel
Strand 6
A
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
191 194first strand
Strand 2
B
198 205anti-parallel
Strand 3
B
208 215anti-parallel
Strand 4
B
258 263anti-parallel
Strand 5
B
248 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 344first strand
Strand 2
B
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
166 167first strand
Strand 2
C
248 252parallel
Strand 3
C
259 263anti-parallel
Strand 4
C
208 214anti-parallel
Strand 5
C
199 205anti-parallel
Strand 6
C
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
307 308first strand
Strand 2
C
334 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
317 319first strand
Strand 2
C
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 344first strand
Strand 2
C
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
166 167first strand
Strand 2
D
248 252parallel
Strand 3
D
258 263anti-parallel
Strand 4
D
208 215anti-parallel
Strand 5
D
199 205anti-parallel
Strand 6
D
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
307 308first strand
Strand 2
D
334 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
317 319first strand
Strand 2
D
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
343 344first strand
Strand 2
D
363 364anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il