Analysis of interatomic Contacts of Structural Units in PDB entry:
5KXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KXA entry

There is 1 chain in PDB entry 5KXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 57GLU 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5KXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 95Right-handed alpha
Helix 2
AA2
A
104 108Right-handed 310
Helix 3
AA3
A
123 128Right-handed alpha
Helix 4
AA4
A
133 139Right-handed alpha
Helix 5
AA5
A
177 182Right-handed alpha
Helix 6
AA6
A
186 196Right-handed alpha
Helix 7
AA7
A
209 220Right-handed alpha
Helix 8
AA8
A
222 227Right-handed alpha
Helix 9
AA9
A
247 255Right-handed 310
Helix 10
AB1
A
259 266Right-handed alpha
Helix 11
AB2
A
281 293Right-handed alpha
Helix 12
AB3
A
312 319Right-handed alpha
Helix 13
AB4
A
322 324Right-handed 310
Helix 14
AB5
A
325 345Right-handed alpha
Helix 15
AB6
A
374 376Right-handed 310
Helix 16
AB7
A
379 381Right-handed 310
Helix 17
AB8
A
404 412Right-handed alpha
Helix 18
AB9
A
427 429Right-handed 310
Helix 19
AC1
A
430 434Right-handed 310
Helix 20
AC2
A
481 485Right-handed 310
Helix 21
AC3
A
508 516Right-handed alpha
Helix 22
AC4
A
531 535Right-handed 310
Helix 23
AC5
A
666 673Right-handed alpha
Helix 24
AC6
A
683 687Right-handed 310
Helix 25
AC7
A
689 694Right-handed alpha
Helix 26
AC8
A
695 698Right-handed 310
Helix 27
AC9
A
706 719Right-handed alpha
Helix 28
AD1
A
719 728Right-handed alpha
Helix 29
AD2
A
749 753Right-handed 310
Helix 30
AD3
A
811 814Right-handed 310
Helix 31
AD4
A
815 823Right-handed alpha
Helix 32
AD5
A
826 835Right-handed alpha
Helix 33
AD6
A
845 854Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 5KXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 311first strand
Strand 2
A
166 172parallel
Strand 3
A
353 358parallel
Strand 4
A
488 491anti-parallel
Strand 5
A
197 198anti-parallel
Strand 6
A
499 500parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
504 505parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
473 474anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
453 455parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 386first strand
Strand 2
A
390 395anti-parallel
Strand 3
A
444 448anti-parallel
Strand 4
A
421 425anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 604first strand
Strand 2
A
836 837anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 614first strand
Strand 2
A
618 623anti-parallel
Strand 3
A
629 636anti-parallel
Strand 4
A
731 738anti-parallel
Strand 5
A
767 775anti-parallel
Strand 6
A
789 797anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 680first strand
Strand 2
A
702 705anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il