Analysis of interatomic Contacts of Structural Units in PDB entry:
5KXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KXJ entry

There is 1 chain in PDB entry 5KXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5KXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
62 74Right-handed alpha
Helix 3
AA3
A
79 100Right-handed alpha
Helix 4
AA4
A
139 149Right-handed alpha
Helix 5
AA5
A
169 172Right-handed 310
Helix 6
AA6
A
207 211Right-handed 310
Helix 7
AA7
A
216 220Right-handed 310
Helix 8
AA8
A
222 232Right-handed alpha
Helix 9
AA9
A
260 265Right-handed alpha
Helix 10
AB1
A
277 282Right-handed alpha
Helix 11
AB2
A
284 288Right-handed 310
Helix 12
AB3
A
289 305Right-handed alpha
Helix 13
AB4
A
317 325Right-handed alpha
Helix 14
AB5
A
325 335Right-handed alpha
Helix 15
AB6
A
389 410Right-handed alpha
Helix 16
AB7
A
411 413Right-handed 310
Helix 17
AB8
A
429 451Right-handed alpha
Helix 18
AB9
A
456 478Right-handed alpha
Helix 19
AC1
A
484 507Right-handed alpha
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There are 5 sheets in PDB entry 5KXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
419 420anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
33 36parallel
Strand 3
A
7 14parallel
Strand 4
A
191 202parallel
Strand 5
A
179 186anti-parallel
Strand 6
A
160 167anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
33 36parallel
Strand 3
A
7 14parallel
Strand 4
A
191 202parallel
Strand 5
A
370 372parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
356 358parallel
Strand 3
A
235 236anti-parallel
Strand 4
A
530 531anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
309 312anti-parallel
Strand 4
A
268 270anti-parallel
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