Analysis of interatomic Contacts of Structural Units in PDB entry:
5KYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KYJ entry

There are 4 chains in PDB entry 5KYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 218ASP 477
B
 GLU 297GLN 543
E
 VAL 218ASP 477
F
 GLU 297GLN 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5KYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
221 245Right-handed alpha
Helix 2
AA2
A
261 288Right-handed alpha
Helix 3
AA3
A
296 319Right-handed alpha
Helix 4
AA4
A
337 343Right-handed alpha
Helix 5
AA5
A
346 364Right-handed alpha
Helix 6
AA6
A
366 379Right-handed alpha
Helix 7
AA7
A
388 411Right-handed alpha
Helix 8
AA8
A
416 445Right-handed alpha
Helix 9
AA9
A
450 457Right-handed alpha
Helix 10
AB1
A
470 477Right-handed alpha
Helix 11
AB2
B
300 311Right-handed alpha
Helix 12
AB3
B
335 356Right-handed alpha
Helix 13
AB4
B
364 388Right-handed alpha
Helix 14
AB5
B
405 411Right-handed alpha
Helix 15
AB6
B
413 424Right-handed alpha
Helix 16
AB7
B
424 431Right-handed alpha
Helix 17
AB8
B
434 447Right-handed alpha
Helix 18
AB9
B
456 479Right-handed alpha
Helix 19
AC1
B
484 491Right-handed alpha
Helix 20
AC2
B
491 512Right-handed alpha
Helix 21
AC3
B
519 527Right-handed alpha
Helix 22
AC4
B
536 542Right-handed alpha
Helix 23
AC5
E
221 245Right-handed alpha
Helix 24
AC6
E
262 288Right-handed alpha
Helix 25
AC7
E
296 319Right-handed alpha
Helix 26
AC8
E
337 343Right-handed alpha
Helix 27
AC9
E
346 364Right-handed alpha
Helix 28
AD1
E
366 379Right-handed alpha
Helix 29
AD2
E
388 411Right-handed alpha
Helix 30
AD3
E
416 445Right-handed alpha
Helix 31
AD4
E
450 457Right-handed alpha
Helix 32
AD5
E
469 477Right-handed alpha
Helix 33
AD6
F
300 311Right-handed alpha
Helix 34
AD7
F
335 356Right-handed alpha
Helix 35
AD8
F
364 388Right-handed alpha
Helix 36
AD9
F
405 411Right-handed alpha
Helix 37
AE1
F
413 424Right-handed alpha
Helix 38
AE2
F
424 432Right-handed alpha
Helix 39
AE3
F
434 447Right-handed alpha
Helix 40
AE4
F
456 479Right-handed alpha
Helix 41
AE5
F
484 491Right-handed alpha
Helix 42
AE6
F
492 512Right-handed alpha
Helix 43
AE7
F
520 526Right-handed alpha
Helix 44
AE8
F
535 542Right-handed alpha
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There are 4 sheets in PDB entry 5KYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
326 329anti-parallel
Strand 3
A
333 336anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 396first strand
Strand 2
B
402 404anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
320 321first strand
Strand 2
E
326 329anti-parallel
Strand 3
E
333 336anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
394 396first strand
Strand 2
F
402 404anti-parallel
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