Analysis of interatomic Contacts of Structural Units in PDB entry:
5L0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L0P entry

There is 1 chain in PDB entry 5L0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 11THR 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5L0P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
26 41Right-handed alpha
Helix 4
AA4
A
54 59Right-handed alpha
Helix 5
AA5
A
62 70Right-handed alpha
Helix 6
AA6
A
73 87Right-handed alpha
Helix 7
AA7
A
101 105Right-handed 310
Helix 8
AA8
A
107 111Right-handed 310
Helix 9
AA9
A
112 128Right-handed alpha
Helix 10
AB1
A
140 147Right-handed alpha
Helix 11
AB2
A
148 156Right-handed alpha
Helix 12
AB3
A
159 174Right-handed alpha
Helix 13
AB4
A
186 190Right-handed 310
Helix 14
AB5
A
192 196Right-handed 310
Helix 15
AB6
A
197 213Right-handed alpha
Helix 16
AB7
A
225 230Right-handed alpha
Helix 17
AB8
A
233 241Right-handed alpha
Helix 18
AB9
A
244 258Right-handed alpha
Helix 19
AC1
A
272 279Right-handed alpha
Helix 20
AC2
A
284 295Right-handed alpha
Helix 21
AC3
A
304 314Right-handed alpha
Helix 22
AC4
A
319 333Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5L0P.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 303first strand
Strand 2
A
347 350anti-parallel
Strand 3
A
336 339anti-parallel
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il