Analysis of interatomic Contacts of Structural Units in PDB entry:
5L13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L13 entry

There are 8 chains in PDB entry 5L13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	SER 500
B	ALA 7	SER 500
C	ALA 7	SER 500
D	ALA 7	SER 500
E	GLN 6	SER 500
F	ALA 7	SER 500
G	ALA 7	SER 500
H	ALA 7	SER 500

There are149 helices in PDB entry 5L13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	70	Right-handed alpha
Helix 2	AA2	A	74	79	Right-handed alpha
Helix 3	AA3	A	80	98	Right-handed alpha
Helix 4	AA4	A	98	111	Right-handed alpha
Helix 5	AA5	A	113	120	Right-handed alpha
Helix 6	AA6	A	120	136	Right-handed alpha
Helix 7	AA7	A	170	185	Right-handed alpha
Helix 8	AA8	A	198	212	Right-handed alpha
Helix 9	AA9	A	227	235	Right-handed alpha
Helix 10	AB1	A	246	260	Right-handed alpha
Helix 11	AB2	A	282	296	Right-handed alpha
Helix 12	AB3	A	297	300	Right-handed 310
Helix 13	AB4	A	314	329	Right-handed alpha
Helix 14	AB5	A	346	363	Right-handed alpha
Helix 15	AB6	A	393	398	Right-handed alpha
Helix 16	AB7	A	412	422	Right-handed alpha
Helix 17	AB8	A	435	446	Right-handed alpha
Helix 18	AB9	A	479	484	Right-handed 310
Helix 19	AC1	B	55	70	Right-handed alpha
Helix 20	AC2	B	74	79	Right-handed alpha
Helix 21	AC3	B	80	98	Right-handed alpha
Helix 22	AC4	B	98	111	Right-handed alpha
Helix 23	AC5	B	113	120	Right-handed alpha
Helix 24	AC6	B	120	136	Right-handed alpha
Helix 25	AC7	B	170	185	Right-handed alpha
Helix 26	AC8	B	198	212	Right-handed alpha
Helix 27	AC9	B	227	235	Right-handed alpha
Helix 28	AD1	B	246	260	Right-handed alpha
Helix 29	AD2	B	282	296	Right-handed alpha
Helix 30	AD3	B	297	300	Right-handed 310
Helix 31	AD4	B	314	329	Right-handed alpha
Helix 32	AD5	B	346	363	Right-handed alpha
Helix 33	AD6	B	393	398	Right-handed alpha
Helix 34	AD7	B	412	422	Right-handed alpha
Helix 35	AD8	B	435	446	Right-handed alpha
Helix 36	AD9	B	468	470	Right-handed 310
Helix 37	AE1	B	478	484	Right-handed 310
Helix 38	AE2	C	55	70	Right-handed alpha
Helix 39	AE3	C	74	79	Right-handed alpha
Helix 40	AE4	C	80	98	Right-handed alpha
Helix 41	AE5	C	98	111	Right-handed alpha
Helix 42	AE6	C	113	120	Right-handed alpha
Helix 43	AE7	C	120	134	Right-handed alpha
Helix 44	AE8	C	170	185	Right-handed alpha
Helix 45	AE9	C	198	212	Right-handed alpha
Helix 46	AF1	C	227	234	Right-handed alpha
Helix 47	AF2	C	246	260	Right-handed alpha
Helix 48	AF3	C	282	296	Right-handed alpha
Helix 49	AF4	C	297	300	Right-handed 310
Helix 50	AF5	C	314	329	Right-handed alpha
Helix 51	AF6	C	346	363	Right-handed alpha
Helix 52	AF7	C	393	398	Right-handed alpha
Helix 53	AF8	C	412	422	Right-handed alpha
Helix 54	AF9	C	435	446	Right-handed alpha
Helix 55	AG1	C	478	484	Right-handed 310
Helix 56	AG2	D	55	70	Right-handed alpha
Helix 57	AG3	D	74	79	Right-handed alpha
Helix 58	AG4	D	80	98	Right-handed alpha
Helix 59	AG5	D	98	111	Right-handed alpha
Helix 60	AG6	D	113	120	Right-handed alpha
Helix 61	AG7	D	120	134	Right-handed alpha
Helix 62	AG8	D	170	185	Right-handed alpha
Helix 63	AG9	D	198	212	Right-handed alpha
Helix 64	AH1	D	227	234	Right-handed alpha
Helix 65	AH2	D	246	260	Right-handed alpha
Helix 66	AH3	D	282	296	Right-handed alpha
Helix 67	AH4	D	297	300	Right-handed 310
Helix 68	AH5	D	314	328	Right-handed alpha
Helix 69	AH6	D	346	363	Right-handed alpha
Helix 70	AH7	D	393	397	Right-handed 310
Helix 71	AH8	D	412	422	Right-handed alpha
Helix 72	AH9	D	435	446	Right-handed alpha
Helix 73	AI1	D	479	484	Right-handed 310
Helix 74	AI2	E	55	70	Right-handed alpha
Helix 75	AI3	E	74	79	Right-handed alpha
Helix 76	AI4	E	80	98	Right-handed alpha
Helix 77	AI5	E	98	111	Right-handed alpha
Helix 78	AI6	E	113	120	Right-handed alpha
Helix 79	AI7	E	120	134	Right-handed alpha
Helix 80	AI8	E	170	185	Right-handed alpha
Helix 81	AI9	E	198	212	Right-handed alpha
Helix 82	AJ1	E	227	235	Right-handed alpha
Helix 83	AJ2	E	246	260	Right-handed alpha
Helix 84	AJ3	E	282	296	Right-handed alpha
Helix 85	AJ4	E	297	300	Right-handed 310
Helix 86	AJ5	E	314	327	Right-handed alpha
Helix 87	AJ6	E	346	363	Right-handed alpha
Helix 88	AJ7	E	393	398	Right-handed alpha
Helix 89	AJ8	E	412	421	Right-handed alpha
Helix 90	AJ9	E	435	446	Right-handed alpha
Helix 91	AK1	E	468	470	Right-handed 310
Helix 92	AK2	E	479	484	Right-handed alpha
Helix 93	AK3	F	55	71	Right-handed alpha
Helix 94	AK4	F	74	79	Right-handed alpha
Helix 95	AK5	F	80	98	Right-handed alpha
Helix 96	AK6	F	98	111	Right-handed alpha
Helix 97	AK7	F	113	120	Right-handed alpha
Helix 98	AK8	F	120	134	Right-handed alpha
Helix 99	AK9	F	170	185	Right-handed alpha
Helix 100	AL1	F	198	212	Right-handed alpha
Helix 101	AL2	F	227	235	Right-handed alpha
Helix 102	AL3	F	246	260	Right-handed alpha
Helix 103	AL4	F	282	296	Right-handed alpha
Helix 104	AL5	F	297	300	Right-handed 310
Helix 105	AL6	F	314	329	Right-handed alpha
Helix 106	AL7	F	346	363	Right-handed alpha
Helix 107	AL8	F	393	398	Right-handed alpha
Helix 108	AL9	F	412	422	Right-handed alpha
Helix 109	AM1	F	435	446	Right-handed alpha
Helix 110	AM2	F	468	470	Right-handed 310
Helix 111	AM3	F	479	484	Right-handed 310
Helix 112	AM4	G	55	70	Right-handed alpha
Helix 113	AM5	G	74	79	Right-handed alpha
Helix 114	AM6	G	80	98	Right-handed alpha
Helix 115	AM7	G	98	111	Right-handed alpha
Helix 116	AM8	G	113	120	Right-handed alpha
Helix 117	AM9	G	120	134	Right-handed alpha
Helix 118	AN1	G	170	185	Right-handed alpha
Helix 119	AN2	G	198	212	Right-handed alpha
Helix 120	AN3	G	227	235	Right-handed alpha
Helix 121	AN4	G	246	260	Right-handed alpha
Helix 122	AN5	G	282	296	Right-handed alpha
Helix 123	AN6	G	297	300	Right-handed 310
Helix 124	AN7	G	314	329	Right-handed alpha
Helix 125	AN8	G	346	363	Right-handed alpha
Helix 126	AN9	G	393	398	Right-handed alpha
Helix 127	AO1	G	412	422	Right-handed alpha
Helix 128	AO2	G	435	446	Right-handed alpha
Helix 129	AO3	G	468	470	Right-handed 310
Helix 130	AO4	G	479	484	Right-handed 310
Helix 131	AO5	H	55	70	Right-handed alpha
Helix 132	AO6	H	74	79	Right-handed alpha
Helix 133	AO7	H	80	98	Right-handed alpha
Helix 134	AO8	H	98	111	Right-handed alpha
Helix 135	AO9	H	113	120	Right-handed alpha
Helix 136	AP1	H	120	136	Right-handed alpha
Helix 137	AP2	H	170	185	Right-handed alpha
Helix 138	AP3	H	198	212	Right-handed alpha
Helix 139	AP4	H	227	235	Right-handed alpha
Helix 140	AP5	H	246	260	Right-handed alpha
Helix 141	AP6	H	282	296	Right-handed alpha
Helix 142	AP7	H	297	300	Right-handed 310
Helix 143	AP8	H	314	329	Right-handed alpha
Helix 144	AP9	H	346	363	Right-handed alpha
Helix 145	AQ1	H	393	397	Right-handed 310
Helix 146	AQ2	H	412	422	Right-handed alpha
Helix 147	AQ3	H	435	446	Right-handed alpha
Helix 148	AQ4	H	468	470	Right-handed 310
Helix 149	AQ5	H	479	484	Right-handed 310

There are 32 sheets in PDB entry 5L13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	27	29	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	47	52	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	369	first strand
Strand 2	B	384	387	anti-parallel
Strand 3	B	404	410	parallel
Strand 4	B	307	311	parallel
Strand 5	B	274	277	parallel
Strand 6	B	428	432	parallel
Strand 7	B	450	453	parallel
Strand 8	A	486	494	parallel
Strand 9	A	150	158	anti-parallel
Strand 10	A	141	144	anti-parallel
Strand 11	D	141	144	anti-parallel
Strand 12	D	150	158	anti-parallel
Strand 13	D	486	494	anti-parallel
Strand 14	C	450	453	parallel
Strand 15	C	428	432	parallel
Strand 16	C	274	277	parallel
Strand 17	C	307	311	parallel
Strand 18	C	404	410	parallel
Strand 19	C	384	387	parallel
Strand 20	C	366	369	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	188	193	parallel
Strand 3	A	161	165	parallel
Strand 4	A	240	244	parallel
Strand 5	A	264	268	parallel
Strand 6	A	472	473	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	384	387	anti-parallel
Strand 3	A	404	410	parallel
Strand 4	A	307	311	parallel
Strand 5	A	274	277	parallel
Strand 6	A	428	432	parallel
Strand 7	A	450	453	parallel
Strand 8	B	486	494	parallel
Strand 9	B	150	158	anti-parallel
Strand 10	B	141	144	anti-parallel
Strand 11	C	141	144	anti-parallel
Strand 12	C	150	158	anti-parallel
Strand 13	C	486	494	anti-parallel
Strand 14	D	450	453	parallel
Strand 15	D	428	432	parallel
Strand 16	D	273	277	parallel
Strand 17	D	305	311	parallel
Strand 18	D	404	410	parallel
Strand 19	D	384	387	parallel
Strand 20	D	366	369	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	468	469	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	27	29	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	47	52	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	188	192	parallel
Strand 3	B	161	165	parallel
Strand 4	B	240	244	parallel
Strand 5	B	264	268	parallel
Strand 6	B	472	473	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	B	380	381	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	27	29	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	47	52	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	188	193	parallel
Strand 3	C	161	165	parallel
Strand 4	C	240	244	parallel
Strand 5	C	264	268	parallel
Strand 6	C	472	473	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	468	469	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	27	29	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	47	52	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	222	first strand
Strand 2	D	188	193	parallel
Strand 3	D	161	165	parallel
Strand 4	D	240	244	parallel
Strand 5	D	264	268	parallel
Strand 6	D	472	473	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	426	first strand
Strand 2	D	468	469	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	27	29	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	40	first strand
Strand 2	E	47	52	anti-parallel

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There are 20 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	369	first strand
Strand 2	F	384	387	anti-parallel
Strand 3	F	404	410	parallel
Strand 4	F	307	311	parallel
Strand 5	F	274	277	parallel
Strand 6	F	428	432	parallel
Strand 7	F	450	453	parallel
Strand 8	E	486	494	parallel
Strand 9	E	150	158	anti-parallel
Strand 10	E	141	144	anti-parallel
Strand 11	H	141	144	anti-parallel
Strand 12	H	150	158	anti-parallel
Strand 13	H	486	494	anti-parallel
Strand 14	G	450	453	parallel
Strand 15	G	428	432	parallel
Strand 16	G	273	277	parallel
Strand 17	G	305	311	parallel
Strand 18	G	404	410	parallel
Strand 19	G	384	387	parallel
Strand 20	G	366	369	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	222	first strand
Strand 2	E	188	193	parallel
Strand 3	E	161	165	parallel
Strand 4	E	240	244	parallel
Strand 5	E	264	268	parallel
Strand 6	E	472	473	anti-parallel

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There are 20 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	366	369	first strand
Strand 2	E	384	387	anti-parallel
Strand 3	E	404	410	parallel
Strand 4	E	305	311	parallel
Strand 5	E	273	277	parallel
Strand 6	E	428	432	parallel
Strand 7	E	450	453	parallel
Strand 8	F	486	494	parallel
Strand 9	F	150	158	anti-parallel
Strand 10	F	141	144	anti-parallel
Strand 11	G	141	144	anti-parallel
Strand 12	G	150	158	anti-parallel
Strand 13	G	486	494	anti-parallel
Strand 14	H	450	453	parallel
Strand 15	H	428	432	parallel
Strand 16	H	273	277	parallel
Strand 17	H	305	311	parallel
Strand 18	H	404	410	parallel
Strand 19	H	384	387	parallel
Strand 20	H	366	369	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	24	first strand
Strand 2	F	27	29	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	40	first strand
Strand 2	F	47	52	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	222	first strand
Strand 2	F	188	193	parallel
Strand 3	F	161	166	parallel
Strand 4	F	240	244	parallel
Strand 5	F	264	268	parallel
Strand 6	F	472	473	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	G	27	29	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	40	first strand
Strand 2	G	47	52	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	218	220	first strand
Strand 2	G	188	193	parallel
Strand 3	G	161	166	parallel
Strand 4	G	240	244	parallel
Strand 5	G	264	268	parallel
Strand 6	G	472	473	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	24	first strand
Strand 2	H	27	29	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	40	first strand
Strand 2	H	47	52	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	222	first strand
Strand 2	H	188	193	parallel
Strand 3	H	161	165	parallel
Strand 4	H	240	244	parallel
Strand 5	H	264	268	parallel
Strand 6	H	472	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L13

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L13