Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L1B entry

There are 4 chains in PDB entry 5L1B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	LYS 817
B	ASN 10	LYS 817
C	ASN 10	LYS 817
D	ASN 10	LYS 817

There are107 helices in PDB entry 5L1B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	36	Right-handed alpha
Helix 2	AA2	A	54	68	Right-handed alpha
Helix 3	AA3	A	81	93	Right-handed alpha
Helix 4	AA4	A	117	129	Right-handed alpha
Helix 5	AA5	A	143	156	Right-handed alpha
Helix 6	AA6	A	172	184	Right-handed alpha
Helix 7	AA7	A	197	211	Right-handed alpha
Helix 8	AA8	A	252	264	Right-handed alpha
Helix 9	AA9	A	279	302	Right-handed alpha
Helix 10	AB1	A	324	335	Right-handed alpha
Helix 11	AB2	A	416	419	Right-handed 310
Helix 12	AB3	A	423	437	Right-handed alpha
Helix 13	AB4	A	462	469	Right-handed alpha
Helix 14	AB5	A	482	487	Right-handed alpha
Helix 15	AB6	A	522	538	Right-handed alpha
Helix 16	AB7	A	538	544	Right-handed alpha
Helix 17	AB8	A	574	585	Right-handed alpha
Helix 18	AB9	A	596	630	Right-handed alpha
Helix 19	AC1	A	638	642	Right-handed 310
Helix 20	AC2	A	653	661	Right-handed alpha
Helix 21	AC3	A	664	677	Right-handed alpha
Helix 22	AC4	A	685	694	Right-handed alpha
Helix 23	AC5	A	706	713	Right-handed alpha
Helix 24	AC6	A	742	756	Right-handed alpha
Helix 25	AC7	A	757	768	Right-handed alpha
Helix 26	AC8	A	773	779	Right-handed alpha
Helix 27	AC9	A	788	814	Right-handed alpha
Helix 28	AD1	B	23	36	Right-handed alpha
Helix 29	AD2	B	54	68	Right-handed alpha
Helix 30	AD3	B	81	93	Right-handed alpha
Helix 31	AD4	B	116	128	Right-handed alpha
Helix 32	AD5	B	143	156	Right-handed alpha
Helix 33	AD6	B	172	184	Right-handed alpha
Helix 34	AD7	B	197	211	Right-handed alpha
Helix 35	AD8	B	252	263	Right-handed alpha
Helix 36	AD9	B	279	302	Right-handed alpha
Helix 37	AE1	B	325	336	Right-handed alpha
Helix 38	AE2	B	416	419	Right-handed 310
Helix 39	AE3	B	423	435	Right-handed alpha
Helix 40	AE4	B	462	469	Right-handed alpha
Helix 41	AE5	B	482	487	Right-handed alpha
Helix 42	AE6	B	513	517	Right-handed 310
Helix 43	AE7	B	522	544	Right-handed alpha
Helix 44	AE8	B	574	586	Right-handed alpha
Helix 45	AE9	B	598	626	Right-handed alpha
Helix 46	AF1	B	638	642	Right-handed 310
Helix 47	AF2	B	653	661	Right-handed alpha
Helix 48	AF3	B	664	676	Right-handed alpha
Helix 49	AF4	B	685	695	Right-handed alpha
Helix 50	AF5	B	706	714	Right-handed alpha
Helix 51	AF6	B	742	756	Right-handed alpha
Helix 52	AF7	B	757	767	Right-handed alpha
Helix 53	AF8	B	792	812	Right-handed alpha
Helix 54	AF9	C	23	36	Right-handed alpha
Helix 55	AG1	C	54	68	Right-handed alpha
Helix 56	AG2	C	81	93	Right-handed alpha
Helix 57	AG3	C	117	129	Right-handed alpha
Helix 58	AG4	C	143	156	Right-handed alpha
Helix 59	AG5	C	172	184	Right-handed alpha
Helix 60	AG6	C	197	212	Right-handed alpha
Helix 61	AG7	C	252	263	Right-handed alpha
Helix 62	AG8	C	279	302	Right-handed alpha
Helix 63	AG9	C	325	336	Right-handed alpha
Helix 64	AH1	C	416	419	Right-handed 310
Helix 65	AH2	C	423	437	Right-handed alpha
Helix 66	AH3	C	462	469	Right-handed alpha
Helix 67	AH4	C	482	487	Right-handed alpha
Helix 68	AH5	C	513	518	Right-handed 310
Helix 69	AH6	C	522	538	Right-handed alpha
Helix 70	AH7	C	538	544	Right-handed alpha
Helix 71	AH8	C	574	586	Right-handed alpha
Helix 72	AH9	C	596	630	Right-handed alpha
Helix 73	AI1	C	636	641	Right-handed 310
Helix 74	AI2	C	653	661	Right-handed alpha
Helix 75	AI3	C	664	676	Right-handed alpha
Helix 76	AI4	C	685	695	Right-handed alpha
Helix 77	AI5	C	706	713	Right-handed alpha
Helix 78	AI6	C	742	756	Right-handed alpha
Helix 79	AI7	C	757	768	Right-handed alpha
Helix 80	AI8	C	788	815	Right-handed alpha
Helix 81	AI9	D	23	36	Right-handed alpha
Helix 82	AJ1	D	54	68	Right-handed alpha
Helix 83	AJ2	D	81	92	Right-handed alpha
Helix 84	AJ3	D	117	128	Right-handed alpha
Helix 85	AJ4	D	143	157	Right-handed alpha
Helix 86	AJ5	D	172	185	Right-handed alpha
Helix 87	AJ6	D	186	188	Right-handed 310
Helix 88	AJ7	D	197	211	Right-handed alpha
Helix 89	AJ8	D	252	263	Right-handed alpha
Helix 90	AJ9	D	279	302	Right-handed alpha
Helix 91	AK1	D	324	334	Right-handed alpha
Helix 92	AK2	D	416	419	Right-handed 310
Helix 93	AK3	D	423	437	Right-handed alpha
Helix 94	AK4	D	462	469	Right-handed alpha
Helix 95	AK5	D	482	487	Right-handed alpha
Helix 96	AK6	D	514	519	Right-handed alpha
Helix 97	AK7	D	524	545	Right-handed alpha
Helix 98	AK8	D	575	586	Right-handed alpha
Helix 99	AK9	D	596	623	Right-handed alpha
Helix 100	AL1	D	653	661	Right-handed alpha
Helix 101	AL2	D	664	676	Right-handed alpha
Helix 102	AL3	D	685	694	Right-handed alpha
Helix 103	AL4	D	706	713	Right-handed alpha
Helix 104	AL5	D	742	756	Right-handed alpha
Helix 105	AL6	D	757	764	Right-handed alpha
Helix 106	AL7	D	774	779	Right-handed alpha
Helix 107	AL8	D	788	817	Right-handed alpha

There are 36 sheets in PDB entry 5L1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	49	first strand
Strand 2	A	11	18	parallel
Strand 3	A	73	75	parallel
Strand 4	A	96	98	parallel
Strand 5	A	110	112	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	132	137	parallel
Strand 3	A	191	195	parallel
Strand 4	A	219	222	parallel
Strand 5	A	241	246	parallel
Strand 6	A	358	363	anti-parallel
Strand 7	A	368	375	anti-parallel
Strand 8	A	379	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	343	344	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	489	491	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	497	498	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	453	first strand
Strand 2	A	460	461	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	49	first strand
Strand 2	B	11	18	parallel
Strand 3	B	72	75	parallel
Strand 4	B	95	98	parallel
Strand 5	B	110	112	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	164	first strand
Strand 2	B	132	137	parallel
Strand 3	B	191	195	parallel
Strand 4	B	219	222	parallel
Strand 5	B	241	246	parallel
Strand 6	B	359	364	anti-parallel
Strand 7	B	367	375	anti-parallel
Strand 8	B	379	382	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	353	354	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	460	461	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	498	first strand
Strand 2	B	730	737	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	50	first strand
Strand 2	C	11	19	parallel
Strand 3	C	72	74	parallel
Strand 4	C	95	98	parallel
Strand 5	C	110	112	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	132	137	parallel
Strand 3	C	191	195	parallel
Strand 4	C	219	222	parallel
Strand 5	C	241	246	parallel
Strand 6	C	359	364	anti-parallel
Strand 7	C	367	375	anti-parallel
Strand 8	C	379	382	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	343	344	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	353	354	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	453	first strand
Strand 2	C	460	461	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	50	first strand
Strand 2	D	11	19	parallel
Strand 3	D	72	74	parallel
Strand 4	D	95	98	parallel
Strand 5	D	110	112	parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	164	first strand
Strand 2	D	132	137	parallel
Strand 3	D	192	195	parallel
Strand 4	D	219	222	parallel
Strand 5	D	241	246	parallel
Strand 6	D	358	363	anti-parallel
Strand 7	D	368	375	anti-parallel
Strand 8	D	379	382	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	343	344	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	353	354	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	480	parallel
Strand 4	D	730	737	anti-parallel
Strand 5	D	489	491	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	480	parallel
Strand 4	D	730	737	anti-parallel
Strand 5	D	496	498	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	460	461	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L1B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1B