Analysis of interatomic Contacts of Structural Units in PDB entry:
5L4Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L4Q entry

There are 2 chains in PDB entry 5L4Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33GLU 335
B
 GLY 33LEU 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5L4Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 98Right-handed alpha
Helix 2
AA2
A
133 140Right-handed alpha
Helix 3
AA3
A
147 167Right-handed alpha
Helix 4
AA4
A
178 180Right-handed 310
Helix 5
AA5
A
204 209Right-handed alpha
Helix 6
AA6
A
209 221Right-handed alpha
Helix 7
AA7
A
222 226Right-handed 310
Helix 8
AA8
A
227 232Right-handed alpha
Helix 9
AA9
A
241 258Right-handed alpha
Helix 10
AB1
A
283 294Right-handed alpha
Helix 11
AB2
A
303 316Right-handed alpha
Helix 12
AB3
B
80 98Right-handed alpha
Helix 13
AB4
B
133 139Right-handed alpha
Helix 14
AB5
B
140 142Right-handed 310
Helix 15
AB6
B
147 167Right-handed alpha
Helix 16
AB7
B
178 180Right-handed 310
Helix 17
AB8
B
204 209Right-handed alpha
Helix 18
AB9
B
209 221Right-handed alpha
Helix 19
AC1
B
222 226Right-handed 310
Helix 20
AC2
B
227 232Right-handed alpha
Helix 21
AC3
B
241 258Right-handed alpha
Helix 22
AC4
B
283 294Right-handed alpha
Helix 23
AC5
B
303 316Right-handed alpha
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There are 4 sheets in PDB entry 5L4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
44 54anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
70 78anti-parallel
Strand 5
A
120 127anti-parallel
Strand 6
A
106 113anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
190 192anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
44 54anti-parallel
Strand 3
B
59 64anti-parallel
Strand 4
B
70 78anti-parallel
Strand 5
B
120 127anti-parallel
Strand 6
B
106 112anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
190 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il