Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L7E entry

There are 2 chains in PDB entry 5L7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 737LYS 984
B
 LYS 432GLU 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5L7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
737 745Right-handed alpha
Helix 2
AA2
A
761 786Right-handed alpha
Helix 3
AA3
A
789 793Right-handed 310
Helix 4
AA4
A
794 823Right-handed alpha
Helix 5
AA5
A
836 843Right-handed alpha
Helix 6
AA6
A
845 863Right-handed alpha
Helix 7
AA7
A
865 878Right-handed alpha
Helix 8
AA8
A
888 908Right-handed alpha
Helix 9
AA9
A
917 948Right-handed alpha
Helix 10
AB1
A
948 953Right-handed alpha
Helix 11
AB2
A
957 973Right-handed alpha
Helix 12
AB3
B
433 441Right-handed alpha
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There are 2 sheets in PDB entry 5L7E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
827 830first strand
Strand 2
A
833 835anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 882first strand
Strand 2
A
976 978anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il