Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LGN entry

There are 2 chains in PDB entry 5LGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 171LEU 840
B
 ARG 308GLU 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5LGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 181Right-handed alpha
Helix 2
AA2
A
189 196Right-handed alpha
Helix 3
AA3
A
196 201Right-handed alpha
Helix 4
AA4
A
203 224Right-handed alpha
Helix 5
AA5
A
230 237Right-handed alpha
Helix 6
AA6
A
245 259Right-handed alpha
Helix 7
AA7
A
287 300Right-handed alpha
Helix 8
AA8
A
340 349Right-handed alpha
Helix 9
AA9
A
375 399Right-handed alpha
Helix 10
AB1
A
411 471Right-handed alpha
Helix 11
AB2
A
477 518Right-handed alpha
Helix 12
AB3
A
526 544Right-handed alpha
Helix 13
AB4
A
557 563Right-handed 310
Helix 14
AB5
A
576 583Right-handed alpha
Helix 15
AB6
A
630 636Right-handed alpha
Helix 16
AB7
A
648 658Right-handed alpha
Helix 17
AB8
A
688 692Right-handed 310
Helix 18
AB9
A
712 720Right-handed alpha
Helix 19
AC1
A
723 740Right-handed alpha
Helix 20
AC2
A
773 782Right-handed alpha
Helix 21
AC3
A
804 808Right-handed 310
Helix 22
AC4
A
814 835Right-handed alpha
Helix 23
AC5
B
317 326Right-handed alpha
Helix 24
AC6
B
329 363Right-handed alpha
Helix 25
AC7
B
367 371Right-handed 310
Helix 26
AC8
B
384 399Right-handed alpha
Helix 27
AC9
B
401 410Right-handed alpha
Helix 28
AD1
B
413 425Right-handed alpha
Helix 29
AD2
B
429 439Right-handed alpha
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There are 8 sheets in PDB entry 5LGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 589first strand
Strand 2
A
303 307parallel
Strand 3
A
280 284parallel
Strand 4
A
624 627parallel
Strand 5
A
800 802parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
325 327anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
569 571anti-parallel
Strand 3
A
353 355anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
372 373anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
408 409anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 622first strand
Strand 2
A
603 610anti-parallel
Strand 3
A
592 600anti-parallel
Strand 4
A
642 644parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 660first strand
Strand 2
A
766 767anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 683first strand
Strand 2
A
697 700anti-parallel
Strand 3
A
706 711anti-parallel
Strand 4
A
664 669anti-parallel
Strand 5
A
750 752anti-parallel
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