Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LGU entry

There are 2 chains in PDB entry 5LGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 171LEU 836
B
 ARG 308GLU 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 5LGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
174 181Right-handed alpha
Helix 2
AA2
A
189 196Right-handed alpha
Helix 3
AA3
A
196 202Right-handed alpha
Helix 4
AA4
A
203 223Right-handed alpha
Helix 5
AA5
A
230 237Right-handed alpha
Helix 6
AA6
A
245 259Right-handed alpha
Helix 7
AA7
A
287 300Right-handed alpha
Helix 8
AA8
A
340 349Right-handed alpha
Helix 9
AA9
A
371 395Right-handed alpha
Helix 10
AB1
A
407 468Right-handed alpha
Helix 11
AB2
A
473 512Right-handed alpha
Helix 12
AB3
A
522 541Right-handed alpha
Helix 13
AB4
A
553 559Right-handed 310
Helix 14
AB5
A
572 579Right-handed alpha
Helix 15
AB6
A
626 632Right-handed alpha
Helix 16
AB7
A
644 654Right-handed alpha
Helix 17
AB8
A
708 716Right-handed alpha
Helix 18
AB9
A
719 736Right-handed alpha
Helix 19
AC1
A
769 778Right-handed alpha
Helix 20
AC2
A
810 831Right-handed alpha
Helix 21
AC3
B
317 323Right-handed alpha
Helix 22
AC4
B
329 363Right-handed alpha
Helix 23
AC5
B
367 371Right-handed 310
Helix 24
AC6
B
384 399Right-handed alpha
Helix 25
AC7
B
401 410Right-handed alpha
Helix 26
AC8
B
413 425Right-handed alpha
Helix 27
AC9
B
429 439Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5LGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
303 307parallel
Strand 3
A
280 284parallel
Strand 4
A
620 623parallel
Strand 5
A
796 798parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
325 328anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
564 567anti-parallel
Strand 3
A
353 355anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 618first strand
Strand 2
A
599 606anti-parallel
Strand 3
A
588 596anti-parallel
Strand 4
A
638 640parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 656first strand
Strand 2
A
762 763anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 679first strand
Strand 2
A
690 696anti-parallel
Strand 3
A
702 707anti-parallel
Strand 4
A
660 665anti-parallel
Strand 5
A
745 748anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il