Analysis of interatomic Contacts of Structural Units in PDB entry:
5LLK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LLK entry

There is 1 chain in PDB entry 5LLK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 61PRO 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5LLK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 88Right-handed alpha
Helix 2
AA2
A
122 126Right-handed 310
Helix 3
AA3
A
158 162Right-handed 310
Helix 4
AA4
A
198 202Right-handed 310
Helix 5
AA5
A
203 219Right-handed alpha
Helix 6
AA6
A
221 223Right-handed 310
Helix 7
AA7
A
274 284Right-handed alpha
Helix 8
AA8
A
284 291Right-handed alpha
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There are 3 sheets in PDB entry 5LLK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
144 157parallel
Strand 3
A
127 138anti-parallel
Strand 4
A
93 98anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
108 111anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 229first strand
Strand 2
A
256 264anti-parallel
Strand 3
A
188 195anti-parallel
Strand 4
A
294 302anti-parallel
Strand 5
A
242 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il