Analysis of interatomic Contacts of Structural Units in PDB entry:
5LPI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LPI entry

There are 4 chains in PDB entry 5LPI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PRO 743	LYS 875
C	GLY 742	LYS 875
A	GLU 747	LYS 875
B	PRO 743	LYS 875

There are 20 helices in PDB entry 5LPI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	767	776	Right-handed alpha
Helix 2	AA2	D	794	802	Right-handed alpha
Helix 3	AA3	D	805	807	Right-handed 310
Helix 4	AA4	D	823	831	Right-handed alpha
Helix 5	AA5	D	855	865	Right-handed alpha
Helix 6	AA6	C	765	776	Right-handed alpha
Helix 7	AA7	C	794	802	Right-handed alpha
Helix 8	AA8	C	805	807	Right-handed 310
Helix 9	AA9	C	823	831	Right-handed alpha
Helix 10	AB1	C	855	865	Right-handed alpha
Helix 11	AB2	A	765	776	Right-handed alpha
Helix 12	AB3	A	794	802	Right-handed alpha
Helix 13	AB4	A	805	807	Right-handed 310
Helix 14	AB5	A	823	830	Right-handed alpha
Helix 15	AB6	A	855	865	Right-handed alpha
Helix 16	AB7	B	765	776	Right-handed alpha
Helix 17	AB8	B	794	802	Right-handed alpha
Helix 18	AB9	B	805	807	Right-handed 310
Helix 19	AC1	B	823	831	Right-handed alpha
Helix 20	AC2	B	855	865	Right-handed alpha

There are 12 sheets in PDB entry 5LPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	780	782	first strand
Strand 2	D	789	791	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	818	820	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	843	844	first strand
Strand 2	D	851	852	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	780	782	first strand
Strand 2	C	789	791	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	809	811	first strand
Strand 2	C	818	820	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	843	844	first strand
Strand 2	C	851	852	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	782	first strand
Strand 2	A	789	791	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	811	first strand
Strand 2	A	818	820	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	844	first strand
Strand 2	A	851	852	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	780	782	first strand
Strand 2	B	789	791	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	811	first strand
Strand 2	B	818	820	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	844	first strand
Strand 2	B	851	852	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LPI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LPI