Analysis of interatomic Contacts of Structural Units in PDB entry:
5LS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LS6 entry

There are 20 chains in PDB entry 5LS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 10TYR 728
B
LYS 77ARG 441
C
HIS 561GLN 685
D
LYS 10TYR 728
E
LYS 77ARG 441
F
HIS 561GLN 685
G
LYS 10GLN 730
H
LYS 77ARG 441
I
HIS 561GLN 685
J
LYS 10TYR 728
K
LYS 77ARG 441
L
HIS 561GLN 685
Q
LEU 2ARG 6
Q
PHE 8SER 11
R
LEU 2ARG 6
R
PHE 8SER 11
S
LEU 2ARG 6
S
PHE 8SER 11
T
LEU 2ARG 6
T
PHE 8SER 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 5LS6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
11 62Right-handed alpha
Helix 2
AA2
A
134 139Right-handed alpha
Helix 3
AA3
A
143 152Right-handed alpha
Helix 4
AA4
A
167 182Right-handed alpha
Helix 5
AA5
A
222 230Right-handed alpha
Helix 6
AA6
A
236 248Right-handed alpha
Helix 7
AA7
A
273 278Right-handed alpha
Helix 8
AA8
A
278 285Right-handed alpha
Helix 9
AA9
A
303 307Right-handed 310
Helix 10
AB1
A
331 344Right-handed alpha
Helix 11
AB2
A
433 448Right-handed alpha
Helix 12
AB3
A
450 459Right-handed alpha
Helix 13
AB4
A
462 476Right-handed alpha
Helix 14
AB5
A
534 539Right-handed alpha
Helix 15
AB6
A
571 576Right-handed alpha
Helix 16
AB7
A
604 609Right-handed alpha
Helix 17
AB8
A
648 661Right-handed alpha
Helix 18
AB9
A
682 687Right-handed 310
Helix 19
AC1
B
267 280Right-handed alpha
Helix 20
AC2
B
339 343Right-handed 310
Helix 21
AC3
C
575 579Right-handed 310
Helix 22
AC4
C
589 602Right-handed alpha
Helix 23
AC5
C
609 625Right-handed alpha
Helix 24
AC6
C
628 630Right-handed 310
Helix 25
AC7
C
631 643Right-handed alpha
Helix 26
AC8
C
643 650Right-handed alpha
Helix 27
AC9
C
652 666Right-handed alpha
Helix 28
AD1
C
670 685Right-handed alpha
Helix 29
AD2
D
11 62Right-handed alpha
Helix 30
AD3
D
134 139Right-handed alpha
Helix 31
AD4
D
143 152Right-handed alpha
Helix 32
AD5
D
167 180Right-handed alpha
Helix 33
AD6
D
222 231Right-handed alpha
Helix 34
AD7
D
236 247Right-handed alpha
Helix 35
AD8
D
273 285Right-handed alpha
Helix 36
AD9
D
334 344Right-handed alpha
Helix 37
AE1
D
433 448Right-handed alpha
Helix 38
AE2
D
450 459Right-handed alpha
Helix 39
AE3
D
462 476Right-handed alpha
Helix 40
AE4
D
534 539Right-handed alpha
Helix 41
AE5
D
571 576Right-handed alpha
Helix 42
AE6
D
604 609Right-handed alpha
Helix 43
AE7
D
649 661Right-handed alpha
Helix 44
AE8
D
683 687Right-handed 310
Helix 45
AE9
E
267 280Right-handed alpha
Helix 46
AF1
F
575 579Right-handed 310
Helix 47
AF2
F
589 602Right-handed alpha
Helix 48
AF3
F
609 625Right-handed alpha
Helix 49
AF4
F
631 643Right-handed alpha
Helix 50
AF5
F
643 651Right-handed alpha
Helix 51
AF6
F
652 666Right-handed alpha
Helix 52
AF7
F
670 683Right-handed alpha
Helix 53
AF8
G
13 62Right-handed alpha
Helix 54
AF9
G
143 152Right-handed alpha
Helix 55
AG1
G
167 182Right-handed alpha
Helix 56
AG2
G
222 231Right-handed alpha
Helix 57
AG3
G
236 248Right-handed alpha
Helix 58
AG4
G
273 278Right-handed alpha
Helix 59
AG5
G
278 285Right-handed alpha
Helix 60
AG6
G
330 344Right-handed alpha
Helix 61
AG7
G
433 448Right-handed alpha
Helix 62
AG8
G
450 459Right-handed alpha
Helix 63
AG9
G
462 476Right-handed alpha
Helix 64
AH1
G
534 540Right-handed alpha
Helix 65
AH2
G
571 576Right-handed alpha
Helix 66
AH3
G
604 609Right-handed alpha
Helix 67
AH4
G
647 661Right-handed alpha
Helix 68
AH5
G
683 687Right-handed 310
Helix 69
AH6
H
267 280Right-handed alpha
Helix 70
AH7
I
575 579Right-handed 310
Helix 71
AH8
I
589 602Right-handed alpha
Helix 72
AH9
I
609 625Right-handed alpha
Helix 73
AI1
I
631 642Right-handed alpha
Helix 74
AI2
I
643 651Right-handed alpha
Helix 75
AI3
I
652 666Right-handed alpha
Helix 76
AI4
I
671 683Right-handed alpha
Helix 77
AI5
J
11 62Right-handed alpha
Helix 78
AI6
J
134 139Right-handed alpha
Helix 79
AI7
J
143 152Right-handed alpha
Helix 80
AI8
J
167 182Right-handed alpha
Helix 81
AI9
J
222 230Right-handed alpha
Helix 82
AJ1
J
236 248Right-handed alpha
Helix 83
AJ2
J
273 278Right-handed alpha
Helix 84
AJ3
J
278 285Right-handed alpha
Helix 85
AJ4
J
303 307Right-handed 310
Helix 86
AJ5
J
330 344Right-handed alpha
Helix 87
AJ6
J
433 447Right-handed alpha
Helix 88
AJ7
J
450 459Right-handed alpha
Helix 89
AJ8
J
462 476Right-handed alpha
Helix 90
AJ9
J
534 539Right-handed alpha
Helix 91
AK1
J
571 576Right-handed alpha
Helix 92
AK2
J
648 661Right-handed alpha
Helix 93
AK3
J
683 687Right-handed 310
Helix 94
AK4
K
267 280Right-handed alpha
Helix 95
AK5
K
339 343Right-handed 310
Helix 96
AK6
L
575 579Right-handed 310
Helix 97
AK7
L
589 602Right-handed alpha
Helix 98
AK8
L
610 625Right-handed alpha
Helix 99
AK9
L
631 642Right-handed alpha
Helix 100
AL1
L
643 650Right-handed alpha
Helix 101
AL2
L
654 666Right-handed alpha
Helix 102
AL3
L
671 683Right-handed alpha
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There are 45 sheets in PDB entry 5LS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
94 97first strand
Strand 2
A
82 87anti-parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
433 439anti-parallel
Strand 5
B
424 429anti-parallel
Strand 6
B
413 418anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 101first strand
Strand 2
B
132 140parallel
Strand 3
B
120 126anti-parallel
Strand 4
B
112 117anti-parallel
Strand 5
B
96 101anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 115first strand
Strand 2
A
680 681parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 121first strand
Strand 2
A
644 647parallel
Strand 3
A
673 676anti-parallel
Strand 4
A
666 668anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
614 618first strand
Strand 2
A
624 628anti-parallel
Strand 3
A
721 722anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
637 639first strand
Strand 2
A
705 712anti-parallel
Strand 3
A
695 702anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 154first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
172 176anti-parallel
Strand 4
B
181 186anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
193 198first strand
Strand 2
B
205 210anti-parallel
Strand 3
B
216 219anti-parallel
Strand 4
B
224 229anti-parallel
Strand 5
B
292 294parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
239 244first strand
Strand 2
B
250 255anti-parallel
Strand 3
B
260 264anti-parallel
Strand 4
B
299 301anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
311 315first strand
Strand 2
B
318 323anti-parallel
Strand 3
B
327 333anti-parallel
Strand 4
B
350 356anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
368 370first strand
Strand 2
B
376 380anti-parallel
Strand 3
B
386 390anti-parallel
Strand 4
B
402 404anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
94 97first strand
Strand 2
D
82 87anti-parallel
Strand 3
E
83 90anti-parallel
Strand 4
E
433 438anti-parallel
Strand 5
E
424 428anti-parallel
Strand 6
E
416 418anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
99 101first strand
Strand 2
E
132 140parallel
Strand 3
E
120 126anti-parallel
Strand 4
E
112 117anti-parallel
Strand 5
E
96 101anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
114 115first strand
Strand 2
D
674 681parallel
Strand 3
D
643 646anti-parallel
Strand 4
D
120 121parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
114 115first strand
Strand 2
D
674 681parallel
Strand 3
D
666 668anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
614 618first strand
Strand 2
D
624 628anti-parallel
Strand 3
D
720 724anti-parallel
Strand 4
D
688 689parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
637 641first strand
Strand 2
D
705 712anti-parallel
Strand 3
D
695 702anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
147 154first strand
Strand 2
E
161 167anti-parallel
Strand 3
E
172 176anti-parallel
Strand 4
E
181 186anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
193 199first strand
Strand 2
E
202 210anti-parallel
Strand 3
E
215 219anti-parallel
Strand 4
E
224 229anti-parallel
Strand 5
E
292 294parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
239 244first strand
Strand 2
E
250 255anti-parallel
Strand 3
E
260 264anti-parallel
Strand 4
E
300 301anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
311 315first strand
Strand 2
E
318 322anti-parallel
Strand 3
E
327 333anti-parallel
Strand 4
E
350 357anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
368 370first strand
Strand 2
E
376 380anti-parallel
Strand 3
E
386 390anti-parallel
Strand 4
E
402 404anti-parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
88 89first strand
Strand 2
G
81 87anti-parallel
Strand 3
G
94 101anti-parallel
Strand 4
H
132 140parallel
Strand 5
H
120 126anti-parallel
Strand 6
H
111 117anti-parallel
Strand 7
H
96 101anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
114 115first strand
Strand 2
G
674 681parallel
Strand 3
G
643 646anti-parallel
Strand 4
G
120 121parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
114 115first strand
Strand 2
G
674 681parallel
Strand 3
G
666 668anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
614 618first strand
Strand 2
G
624 628anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
637 641first strand
Strand 2
G
705 712anti-parallel
Strand 3
G
695 702anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
82 86first strand
Strand 2
H
436 439anti-parallel
Strand 3
H
424 429anti-parallel
Strand 4
H
413 418anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
147 155first strand
Strand 2
H
160 167anti-parallel
Strand 3
H
172 175anti-parallel
Strand 4
H
182 186anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
193 198first strand
Strand 2
H
205 210anti-parallel
Strand 3
H
215 219anti-parallel
Strand 4
H
224 229anti-parallel
Strand 5
H
292 294parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
239 244first strand
Strand 2
H
250 255anti-parallel
Strand 3
H
260 264anti-parallel
Strand 4
H
299 301anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
311 315first strand
Strand 2
H
318 322anti-parallel
Strand 3
H
327 333anti-parallel
Strand 4
H
350 357anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
368 370first strand
Strand 2
H
376 380anti-parallel
Strand 3
H
386 390anti-parallel
Strand 4
H
402 404anti-parallel
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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
94 97first strand
Strand 2
J
82 87anti-parallel
Strand 3
K
82 89anti-parallel
Strand 4
K
433 439anti-parallel
Strand 5
K
424 429anti-parallel
Strand 6
K
413 418anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
99 101first strand
Strand 2
K
131 140parallel
Strand 3
K
120 127anti-parallel
Strand 4
K
111 117anti-parallel
Strand 5
K
96 101anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
114 115first strand
Strand 2
J
673 681parallel
Strand 3
J
643 647anti-parallel
Strand 4
J
120 121parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
114 115first strand
Strand 2
J
673 681parallel
Strand 3
J
666 668anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
614 618first strand
Strand 2
J
624 628anti-parallel
Strand 3
J
720 721anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
637 640first strand
Strand 2
J
705 712anti-parallel
Strand 3
J
695 702anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
688 689first strand
Strand 2
J
723 724parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
147 155first strand
Strand 2
K
160 167anti-parallel
Strand 3
K
172 176anti-parallel
Strand 4
K
181 186anti-parallel
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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
193 198first strand
Strand 2
K
205 210anti-parallel
Strand 3
K
215 219anti-parallel
Strand 4
K
224 229anti-parallel
Strand 5
K
292 294parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
239 244first strand
Strand 2
K
250 255anti-parallel
Strand 3
K
260 264anti-parallel
Strand 4
K
299 301anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
311 315first strand
Strand 2
K
318 322anti-parallel
Strand 3
K
327 333anti-parallel
Strand 4
K
350 357anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
376 380first strand
Strand 2
K
386 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il