Analysis of interatomic Contacts of Structural Units in PDB entry:
5LUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LUA entry

There are 4 chains in PDB entry 5LUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 26THR 146
A
HIS 148LYS 287
B
GLY 26THR 146
B
HIS 148LYS 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5LUA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
39 41Right-handed 310
Helix 2
AA2
A
42 59Right-handed alpha
Helix 3
AA3
A
62 64Right-handed 310
Helix 4
AA4
A
104 108Right-handed 310
Helix 5
AA5
A
109 119Right-handed alpha
Helix 6
AA6
A
120 125Right-handed 310
Helix 7
AA7
A
163 176Right-handed alpha
Helix 8
AA8
A
190 195Right-handed 310
Helix 9
AA9
A
232 244Right-handed alpha
Helix 10
AB1
A
250 262Right-handed alpha
Helix 11
AB2
A
273 279Right-handed 310
Helix 12
AB3
A
280 285Right-handed alpha
Helix 13
AB4
B
39 41Right-handed 310
Helix 14
AB5
B
42 58Right-handed alpha
Helix 15
AB6
B
62 64Right-handed 310
Helix 16
AB7
B
104 108Right-handed 310
Helix 17
AB8
B
109 119Right-handed alpha
Helix 18
AB9
B
121 125Right-handed 310
Helix 19
AC1
B
163 176Right-handed alpha
Helix 20
AC2
B
190 195Right-handed 310
Helix 21
AC3
B
232 244Right-handed alpha
Helix 22
AC4
B
250 262Right-handed alpha
Helix 23
AC5
B
273 279Right-handed 310
Helix 24
AC6
B
280 285Right-handed alpha
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There are 6 sheets in PDB entry 5LUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 69first strand
Strand 2
A
29 35parallel
Strand 3
A
140 146parallel
Strand 4
A
181 186parallel
Strand 5
A
204 208parallel
Strand 6
A
268 271anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
149 150first strand
Strand 2
A
153 155anti-parallel
Strand 3
A
160 162anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 222first strand
Strand 2
A
227 231anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 69first strand
Strand 2
B
29 35parallel
Strand 3
B
140 146parallel
Strand 4
B
181 186parallel
Strand 5
B
204 208parallel
Strand 6
B
268 271anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 150first strand
Strand 2
B
153 155anti-parallel
Strand 3
B
160 162anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
218 222first strand
Strand 2
B
227 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il